LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g2175	ATGGGTAGCATCGAAGACGAGGTTGCAATTTCAGGAGAGGGAGTGAAAGACACAGACACAGTGTATGTGGCGGTGGGAAAGAACGTGGAGAAGAGCCAACAATTGTTGCATTGGGCTGCTAAGAATTTTTCACACAAAAAAATTTGCCTTCTTCATGTTCACCGACCCAATTCCTTCAACAGAATTCTTTCTGGGTCTGAAGACTCTGAACCCAAAGACCATGCAATCAAGGCATTCCAGGAGCATGGAAGACAAACAGTGCATGAACTTCTAGACCAATACATTCTCACTCTGGTTCCAGGAGGGGTAACAGCCTATAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCTCAAAAGCTATTGCTCAACACAACATTAGATGGCTTGTAATGGGAGCAGCAGCAGACAGATATAACTTAGGTAAACTGGCTAAGCAAGAGTCAGAGAAAGCTATTCTTGTGCGTGAACAAGCATTGCTGTCGTGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGTAAACATACTTCAGACATAGAGACCGCCCCTGCATTTTTGGTGCTCACTTCAAATACAGAAGCCAAACAATCAGACAAGGTTAAGTCAGAATCAATTCCTGATGCTTTGAAATACTTAGATTCTGATGATATGGAGGAGGTCAAAAGTGTCAGTTCCTATCATTCATTAAATTCAAAATGGTCTTTTAATAGTGTCAAGGACAGGTCAAAGTTGGCAGATTTTCTGTTTCATGAGGAGGAAAAAGAAGAGAGGGAACAAGAAAGTAAAGTCAATGGTAGACTGGAAAGAACTATTGTAGATGCTAAGAGCATGAAACGAAAAGGATATGAAGAGGCATTAAAGAGATGGAAAGTAGGAAACAGCACTATGGAGGATGAAACATTAGAAGGCCAGTGCGCTAAGGAGATAAGCAGAAGAAAAGAAGTTGAAGAACAATTGGCGATGGAAAACAAAGAAGTACAGGAAATGAAGAATCAGCGAAATGAAATCATGGATGAATTGCATATGGTCCAAGACCAAAATTCAGCACTTAAGAACCAAATTTCTGAGTCCCAGCATACGGTAACAGAGTTGGAGGAAAAAATCATATCAGCTGTGGATCTCTTGATAAGTTTCCGGGAAAAACGAGATAAGCTTCGGATAGAGCATGCAAATGCAGTTAGGGAAGTCAAAATGCTGAGAAAATTTGGGAAAACACATACTGCCTTCTCTTATAGGGTAGAATTCCCTGCATATTCTTTCATGGAAATCAATGAAGCAACCCATGATTTTGATCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCAATTAAAATGTTACCCTCTTATGGTTGTCAGAGCCAATTGGACTTCCAACATCAGGTAGAGGTTTTGAGTAGGGTAAGGCATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACCTAAACAATGGAAGCCTTGAAAGCCACCTTGCCCGCAAAGACAAGAATCCTCTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGATTCTCCTTGATGCTAATTTTGTTGCCAAACTCGGAGACTTGGGCGTTCCTTCTTTAGTCCAGCAAGGTGTGGATTCAGTTGACACAAGCACAGTATGTAATAACTTGAATGAAAGTCTGGCGTATGTGGATCCAGAGTATCTTGTCTCTGGCAAGTTTACACCAGAATCAGATGTATATTCCTTTGGAATCATATTGTTACAACTTCTAACTGGAAGACCACTTTCGGGGTTAATTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAATATTGGACATTTCAGCTGGTGAATGGCCACTTTTTCAAACCAAACAGCTGGCATATTTAGCATTGAGGTGTTGTGGAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATCAACATGTCACCATGTTTGACTTCAAAGAAGCTTCAACGTGCTCCTTCCCATTTTGTCTGCCCCATTCTCCAGGAAGTAATGGAAGATCCATATATAGCTGCAGATGGCTTTACATATGAAGCAGAGGCAATAAGTGGATGGTTGAATAGTGGTCACGACACTTCGCCCATGACAAACCTCAAGCTTGAACACACAGATTTGGTACCTAATTATGCTCTGCATAATGCAATTCAGGAGTGGCAACAACAGTGA	2373	0.4105	MGSIEDEVAISGEGVKDTDTVYVAVGKNVEKSQQLLHWAAKNFSHKKICLLHVHRPNSFNRILSGSEDSEPKDHAIKAFQEHGRQTVHELLDQYILTLVPGGVTAYKLLIEMDDIEKGISKAIAQHNIRWLVMGAAADRYNLGKLAKQESEKAILVREQALLSCNIWFICKGNLICTRVYSKHTSDIETAPAFLVLTSNTEAKQSDKVKSESIPDALKYLDSDDMEEVKSVSSYHSLNSKWSFNSVKDRSKLADFLFHEEEKEEREQESKVNGRLERTIVDAKSMKRKGYEEALKRWKVGNSTMEDETLEGQCAKEISRRKEVEEQLAMENKEVQEMKNQRNEIMDELHMVQDQNSALKNQISESQHTVTELEEKIISAVDLLISFREKRDKLRIEHANAVREVKMLRKFGKTHTAFSYRVEFPAYSFMEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGCQSQLDFQHQVEVLSRVRHPNLLTLIGSCAESRSLVYEYLNNGSLESHLARKDKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKILLDANFVAKLGDLGVPSLVQQGVDSVDTSTVCNNLNESLAYVDPEYLVSGKFTPESDVYSFGIILLQLLTGRPLSGLIRDMKCALEKENLKAILDISAGEWPLFQTKQLAYLALRCCGKTWLNRPDLVSEIWSVLEPFKATCINMSPCLTSKKLQRAPSHFVCPILQEVMEDPYIAADGFTYEAEAISGWLNSGHDTSPMTNLKLEHTDLVPNYALHNAIQEWQQQ*	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr8g2175	790	Coils	Coil	258	278	-	-
	Apr8g2175	790	Gene3D	HUPs	19	148	IPR014729	-
	Apr8g2175	790	ProSitePatterns	Protein kinases ATP-binding region signature.	444	465	IPR017441	GO:0005524
	Apr8g2175	790	SUPERFAMILY	Protein kinase-like (PK-like)	415	699	IPR011009	-
	Apr8g2175	790	Pfam	Protein tyrosine and serine/threonine kinase	443	690	IPR001245	GO:0004672\|GO:0006468
	Apr8g2175	790	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	20	135	-	-
	Apr8g2175	790	CDD	STK_N	20	172	-	-
	Apr8g2175	790	Gene3D	Phosphorylase Kinase; domain 1	411	510	-	-
	Apr8g2175	790	Gene3D	Transferase(Phosphotransferase) domain 1	511	706	-	-
	Apr8g2175	790	CDD	RING-Ubox_WDSUB1_like	725	766	-	-
	Apr8g2175	790	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 32	15	789	-	-
	Apr8g2175	790	SMART	Ubox_2	724	787	IPR003613	GO:0004842\|GO:0016567
	Apr8g2175	790	PANTHER	OS02G0152300 PROTEIN	15	789	-	-
	Apr8g2175	790	ProSiteProfiles	Protein kinase domain profile.	438	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Apr8g2175	790	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	720	790	IPR013083	-
	Apr8g2175	790	ProSiteProfiles	U-box domain profile.	720	790	IPR003613	GO:0004842\|GO:0016567
	Apr8g2175	790	Coils	Coil	313	375	-	-
	Apr8g2175	790	SUPERFAMILY	RING/U-box	719	790	-	-
	Apr8g2175	790	Pfam	U-box domain	721	789	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g2175	Apr-Chr8	32277357	32285488	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g2175	47	790	U-box Gene Family	AT3G49060	45.666	0.0	613

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Apr8g2175		PK_Tyr_Ser-Thr	1.4e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g2175	-		-	aprc:113871315	1461.43