Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2174 ATGCCAGTTGCAAAACTCACGGCCTCTGGCAGTTCTGATTTCACAAAAACAGATGACGGAAATGATTCTTTAGATACTATAATCAGACAAGCAATTGGAAAAGAACCTTTCCTTTCCTTTCCCAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTAGATCAGCAAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAGAAGTGTGACAAGTGCTCTCGAGAATTTTGCTCTCCAATTAATTATAGAAGACATATACGAGTACACCATCGACTGAAAAAGCTTGATAAGGACTCTAAAAAAAATAGGGATCTTTTGGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAGGTTGCGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAGGCTTTGACTACTATAAGAAAACAAGGATTTTCTTCCTTTCCGCAGTATTATCTGAGGTCTGGTTCAGCTCTTTTGGATATTGTTCAATCCAGACCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTTGACGATTCTAGTGAAAAAACATTTTTATGTGGATCAGCAGTGTCCATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTCGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTGGAGCAGAAATTGGTGAAGGAATGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAAAAGCTACTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGACAAGTTGAGATTTTAGAGCGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTCGAAGATTACTCAGAAATTAAAGCGAACATAAGCAGCACAGGAGACGATGAATCGCCAGCAGAAGTATCGTTTGGTACATGTGACTTTGAAGCACATAATCCAGATATATTTGCGGATCATTCCCCTTCATCTCATGTAACTCCTCTCTGCCTAGACATTAATGAAGGTATAGAAAGGGATACATTGTCAGGGTATGATTGTGACTCTGATCAGTATATAAAGCGACAGATATCAAAAACACATAATCGCCGGCGCACAGTGGCTGCCAGGCGGCAGGGGCTGCCGAAATCGCAATGGGCTAGAGCCAATGGTTTGCATGCAAGCCAGAATTCTCAAATGTCAAAGCTTGGAGTTATTAAAAAACATGGAATCAATCGTGATCAAAGGGCAGCTCCTATAGTTAATAGTAGTAAAGTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAAACTGCAGAAAGAACCTGAGAAAGGTAAGAATCATGAAGTTTTGATAGGATCTGTGTCTGTTAGTCTGGGTAATTGCGGTCAGTCAGAAGGAAATTTTGTGGCATCCCAGCGGGACTGCTTGGTAGAGAATCTGGCCAAGCAGAATACTACTCAGGAGAAGCCAATGAAACTCGATTCCTCTCAGGGAGGCAACAGTCGGTTAACAGTTAAGTTTTGGAGGCCTGTTAGTCAGCATGGAACTAAAGATCCATTGCCACTTCAAAGTGGTGGGACAGAAGCTGATGTAGTTAATGGAAAATATGACCAAAATTCGTCAGGTTCAAGCAATATAAGGTTGTGTAGTCTAAACGGTAGTGGTATTGATTTTGGGAGCAGTTTTCCCGATACTGGGGCTAATATAGATTCAGGAAGTTTACGGTTATCCAGCCATGCTGCCAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAGTTGGTTGTTTCACCTGATTTTGAACCTCGTGGAGAGAACCGGTTGCCTGCAACCTCCGGAGTTGCTGAACCCACCAAACCCAGAACGAAGCCTGACAAGGGAATCAAGATAAAGTACATTCCCAAACAAAAAACAGCAACCGAGTAA 1977 0.4274 MPVAKLTASGSSDFTKTDDGNDSLDTIIRQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQGWPLLSPVKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEVASFKNVMLEEVPGSSILKALTTIRKQGFSSFPQYYLRSGSALLDIVQSRPSSFPISSQELFSILDDSSEKTFLCGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKEWLADKDAEALRCQKLLVEEEEAAQKRQVEILERKRQKKLRQKEHKARERLEDYSEIKANISSTGDDESPAEVSFGTCDFEAHNPDIFADHSPSSHVTPLCLDINEGIERDTLSGYDCDSDQYIKRQISKTHNRRRTVAARRQGLPKSQWARANGLHASQNSQMSKLGVIKKHGINRDQRAAPIVNSSKVWSRKPKPETNGVVLKAKLQKEPEKGKNHEVLIGSVSVSLGNCGQSEGNFVASQRDCLVENLAKQNTTQEKPMKLDSSQGGNSRLTVKFWRPVSQHGTKDPLPLQSGGTEADVVNGKYDQNSSGSSNIRLCSLNGSGIDFGSSFPDTGANIDSGSLRLSSHAAKAFLAQRWKEAISSNHVKLVVSPDFEPRGENRLPATSGVAEPTKPRTKPDKGIKIKYIPKQKTATE* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2174 658 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Apr8g2174 658 MobiDBLite consensus disorder prediction 617 643 - -
Apr8g2174 658 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 656 - -
Apr8g2174 658 SMART c2h2final6 73 95 IPR013087 -
Apr8g2174 658 Coils Coil 262 297 - -
Apr8g2174 658 ProSitePatterns Zinc finger C2H2 type domain signature. 75 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2174 Apr-Chr8 32269997 32277954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2174 19 654 C2H2 Transcription Factor Family AT4G25610 45.412 3.48e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g2174 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2174 - - gmx:100799153 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0686 6 10446623 10456527 Apr8g2174 8 32269997 32277954 PCT