Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2153 ATGGTTTCCAAAAACCCGAACCCCTCAGAGGCTTTCTATTTGGATCCCTCTGGCATGCAGCTTCCTGGTCTTCTTCCCTTTGCCGCCACTGCCACCGATTCACTTGAGGACCCTTCTAAGAAGACTCGCAAACCATACACTATTACTAAGTCTAGAGAGAGCTGGACCGAACCTGAGCATGACAAGTTCCTTGAAGCTCTTCAATTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGGTCAAAGACAGTTATCCAGATACGTAGTCATGCACAGAAGTACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATATCCCCAGAAAGCTTCCAAAAATGCTCCAGTACTCTCACAAGTATCAGGATCCTTTCAATCTTCATCTGCTTTGCTTGAACCTGGATGCATAATAAAGCATGATTCTTCTGCAATGCTTAAAACTCCTATTATTAACACAGCAGTGTCTTCCTGGTCAAACAACACTTTGCAGAAAACAGCCAATGTATTGCATGGGCAAAAAGTGAATCATTGTTGCAGTAGCCGTGAAAGCACTCCTAGAGCCCGACTTGGTGAATCTAATGGTAAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCCGATTTTGCTCTAGTATACAGCTTTATTGGCAGTGTATTTGACCCAAATGTATCTGGACATCTGCATAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTACTGCTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGATTTTGAGGATCATAGAAGGCTGCTTGCATCATATGAGGTGGAACCTGAGACAGATAACTGTATTATCAATGTAGATCAATTCATGCATAATGAGCAGTTGAAGAGTGCTACTTAG 930 0.4247 MVSKNPNPSEAFYLDPSGMQLPGLLPFAATATDSLEDPSKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSSSALLEPGCIIKHDSSAMLKTPIINTAVSSWSNNTLQKTANVLHGQKVNHCCSSRESTPRARLGESNGKGNNSHPLRVLPDFALVYSFIGSVFDPNVSGHLHKLKRMDPIDVETVLLLMRNLSINLASPDFEDHRRLLASYEVEPETDNCIINVDQFMHNEQLKSAT* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2153 309 MobiDBLite consensus disorder prediction 193 214 - -
Apr8g2153 309 ProSiteProfiles Myb-like domain profile. 47 97 IPR001005 -
Apr8g2153 309 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Apr8g2153 309 PANTHER SWI/SNF COMPLEX-RELATED 3 300 - -
Apr8g2153 309 Pfam Myb-like DNA-binding domain 52 97 IPR001005 -
Apr8g2153 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 50 99 IPR006447 GO:0003677
Apr8g2153 309 Gene3D - 55 102 - -
Apr8g2153 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 101 IPR017930 -
Apr8g2153 309 ProSiteProfiles SANT domain profile. 50 101 IPR017884 -
Apr8g2153 309 PANTHER PROTEIN REVEILLE 6 3 300 - -
Apr8g2153 309 MobiDBLite consensus disorder prediction 102 133 - -
Apr8g2153 309 MobiDBLite consensus disorder prediction 36 54 - -
Apr8g2153 309 MobiDBLite consensus disorder prediction 30 54 - -
Apr8g2153 309 CDD SANT 54 97 IPR001005 -
Apr8g2153 309 SMART sant 51 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2153 Apr-Chr8 32118593 32153734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr8g2153 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2153 - - gmx:778166 498.434