Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2150 ATGGCTTCCGATCTCGAGCTGAATGCCAAAGAGGCTTTCGAAGATGATAACTATGAGCTAGCCTACGACCTCTTAACTCAGGCTATTGATCTCAGCCCCAACAACGCCGACCTATATGCAGACCGTGCCCAGGTCAACATCAAAGTCAACAATCTTCCCGAGGCTGTTGCCGATGCAAACAAGTCAATTGAGTTGAATCCTTCTCACTCAAAAGCATATTTGCGCAAAGGAACTGCATGCATCAAGCTTGAGGAATATCAGACTGCTAAGGCGGCTTTAGAGTTGGGTAAGCCATTGGCACCAGGAGACTCTAGATTTACTGATTTGATCGAAGAGTGTGATAAGCTCATTGCAGAAGAACCTGGTTCCATACCCATACAAGAAAAGACCACAACACAGAATGCTGCTACAAAAGCTGTTCAGCCAGATAATCATTTTCCAGGGCCACCAACAGCAACAGTGGCTAAACCTAAATACAGGCATGAATTCTTCCAGAAACCTGATGAGGTGGTTGTTACCATATTTGCAAAGGGCATTCAACGGGACAGCATTACTGTTGACTTTGGTGAACAAATACTAAGTGTTAACATTAATATCCCTGGTGAAGAGGCATATGTATTCCAACCTCGCTTATTTGGAAAGATCATACCCGCCAGATGCCGGTACGAAGTTTTGTCCACCAAAATTGAAATTCGCCTTGCAAAAGCAGAAACTATCCAATGGACATCTCTACAATTCACCAAGGGTAGCACAGTTCCACAGAGAGTTAATATTTCGACAGTTGCTGGTGAAAGACCCACTTACCCATCCTCAAAACCAAAAAGAACAGATTGGGATAAATTGGAAGCTCAAGTTAAACAAGAGGAGAAAGAAGAAAAACTTGATGGTGATGCAGCTTTAAACAAATTTTTCCGTGGGATATATCTAGATGCAGATGAGGACGCAAGAAGAGCAATGAGCAAATCATTTGTGGAGTCTAATGGAACAGTCCTTTCTACAAACTGGAGAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCACCTGATGGCATGGAGTTAAAGAAATGGGAATATTGA 1077 0.4299 MASDLELNAKEAFEDDNYELAYDLLTQAIDLSPNNADLYADRAQVNIKVNNLPEAVADANKSIELNPSHSKAYLRKGTACIKLEEYQTAKAALELGKPLAPGDSRFTDLIEECDKLIAEEPGSIPIQEKTTTQNAATKAVQPDNHFPGPPTATVAKPKYRHEFFQKPDEVVVTIFAKGIQRDSITVDFGEQILSVNINIPGEEAYVFQPRLFGKIIPARCRYEVLSTKIEIRLAKAETIQWTSLQFTKGSTVPQRVNISTVAGERPTYPSSKPKRTDWDKLEAQVKQEEKEEKLDGDAALNKFFRGIYLDADEDARRAMSKSFVESNGTVLSTNWREVGSKKVEGSPPDGMELKKWEY* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2150 358 PANTHER PROTEIN SGT1 HOMOLOG A 1 358 - -
Apr8g2150 358 SUPERFAMILY TPR-like 9 113 IPR011990 GO:0005515
Apr8g2150 358 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Apr8g2150 358 CDD p23_CS_SGT1_like 162 244 - -
Apr8g2150 358 SUPERFAMILY HSP20-like chaperones 144 252 IPR008978 -
Apr8g2150 358 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515
Apr8g2150 358 ProSiteProfiles SGS domain profile. 267 358 IPR007699 -
Apr8g2150 358 SMART tpr_5 70 103 IPR019734 GO:0005515
Apr8g2150 358 SMART tpr_5 36 69 IPR019734 GO:0005515
Apr8g2150 358 SMART tpr_5 2 35 IPR019734 GO:0005515
Apr8g2150 358 Pfam CS domain 160 235 IPR007052 -
Apr8g2150 358 Pfam Tetratricopeptide repeat 71 94 IPR019734 GO:0005515
Apr8g2150 358 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Apr8g2150 358 Gene3D - 157 247 IPR008978 -
Apr8g2150 358 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Apr8g2150 358 Pfam SGS domain 277 356 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2150 Apr-Chr8 32099867 32103481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2150 1 115 U-box Gene Family AT3G07370 27.731 1.80e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2150 K12795 - gmx:100777554 584.719