Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2144 ATGGAACAGAAGCACTTGCTGTTGTCAGCATTGAGTGTTGGGGTTGGTTTGGGTGTAGGGTTGGGATTGAGCACAGGACAGAAATGGGTTGGAGGGAATTGTGAGAGTGATGAGATTTCTGGGGAACAGATTGTGCAAGAGCTTTACAAAAAAGTTGTTGAAGGCAAAGATAGCAAAATCACATTTGATGACTTTCCTTATTACTTAAGCGAAAGAATCCAATTTTCATTGACAAGTGCTGGATATGTTTATTTAAAAGAAGAAAACTTTTCCAAGCACATGAGGAACCTTTCTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACTTTATCTGCAAATGCTTGCCGAAGCTTTAGCACATTACTTTGAATCAAAGTTACTTTTGCTAGACGTTACTGACTTCTCTTTGAAGATGCAGAGCAAATATGGATGTTCTAGAAAAGCACCATATTTTAAAAGGTCTATATCTGAGGTGACTTTGGAGCGAGTGTCTGGTTTGTTTGGTTCGTTGTCAGTCCTCCCTTCAACATCCAAAACTAGAGGTACACTACGTCGACAAAGTAGTGAAATTAAAAATCCCATCAATCCTCCAAAGCTTCGTAGGAATGCCTCTAATGCATGTGATACGACTAGCACTTCCCAACATGGTCCATCAGATCCAGCTCCTTTGAGGTGTGCAAGCCGCTTCTGTTTTGATGAAAAGCTGTTCGTGCAGTCACTTTATAAGGTCTTGGTTTCTATCTCTGAAACTGGTTCTATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTCTTCGATCACCAAGGTTACACAATTTGTTCCAAAATCTAATAAAGAAACTTTCGGGGTCAGTGTTAATACTCGGTTCCCAGATCTTTGAAGATGATTGCCCAGATGTTGATGAAAAGCTTACTATGTTATTCCCTTACCACATTAAAATCAAACCACCTCGAGATGAAATCCATCTTGGGAGCTGGAAAACCAAACTAGAAGAGGACAAGAAAATAATTCAGTTTCAAGATAGCAGAAACCACATTGCTGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGGATTCTCTCTGTCATGCCAACACTATGCTACTCAGTGATTCCATTGAAGAGATTGTGATGTCTGCAATTTCTTACCACTTGATGGAGACCAAATGTCCAGAATACCGCAATGGAAAGCTAGTTATATCAGCCAAGAGTTTGTCCCATGTATTGAATCTGTTCCAGGATGGTGAAAGTAATATGAATACTAAAGATTCAAACAAGGACAATGTCGGAGAAGATATCACTGTTGCAAAGAATGATACTCCTGCAAAGGAATTTCCTCCTGACAATGAGTTTGAGAAGCGCATGAGAGCAGAGGTTGTCCCTGCGAATGAGATAGGGGTTACATTTGCAGACGTTGGTGCATTGGATGATATTAAAGAATTGCTTCAAGATGAGGTCATGCTTCCCTTTAGAAGACCAGATTTGTTCAAAGGTGGGCTTCTGAAGCCTTATAGAGGTATATTGCTTTTTGGGCCACCTGGTACAGGAAAAACAATGCTTGCCAAGGCAATTGCAAATGAAGTTGGAGCTAGTTTCATTAACGTTTCAATGTCCACCATAACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTTCGAGCACTGTTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAAGTTGATAGCATGCTTGGACAGCGGAGTAGATATGGAGAGCACGAGGCAATGAGAAAGATTAAAAATGAATTCATGACCCACTGGGATGGGCTATTGTCAAAACCTGGTGAGAAAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGATCTTCCATCTGCTGAGACCAGGGAAATGATCTTGAAAACACTCCTGGCTAAGGAAAATTTTGAAAATATAGACTTTAAGGAGCTTTCAACCATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATTTGTGCACAACTGCTGCTTATGGGCCTGTTAGAGAGCTATTACAGCAGGAGAGGTTGAAGGAGAAGGTAGAAGAGAAGAAAGTGGAGGCAGAAGTTCAAAGCTCAGAAGGTGCTTCCAATGCTAAAGAAGACCAAGTGATTACTTTGAGGCCTTTAAACATGAAAGACATGAGACAGGCAAAGAGTCTGGTGGCAGCGAGTTTTGCTGCAGAAGGATCAATAATGAGTGAGCTGAAGCAGTGGAATGAGTTGTATGGGGAAGGAGGTTCAAGGAAGAAACAACAGCTTACTTATTTCCTTTAG 2355 0.4064 MEQKHLLLSALSVGVGLGVGLGLSTGQKWVGGNCESDEISGEQIVQELYKKVVEGKDSKITFDDFPYYLSERIQFSLTSAGYVYLKEENFSKHMRNLSPASRAILLSGPAELYLQMLAEALAHYFESKLLLLDVTDFSLKMQSKYGCSRKAPYFKRSISEVTLERVSGLFGSLSVLPSTSKTRGTLRRQSSEIKNPINPPKLRRNASNACDTTSTSQHGPSDPAPLRCASRFCFDEKLFVQSLYKVLVSISETGSIILYIKDVEKLFLRSPRLHNLFQNLIKKLSGSVLILGSQIFEDDCPDVDEKLTMLFPYHIKIKPPRDEIHLGSWKTKLEEDKKIIQFQDSRNHIAEVLAASDIDCDDLDSLCHANTMLLSDSIEEIVMSAISYHLMETKCPEYRNGKLVISAKSLSHVLNLFQDGESNMNTKDSNKDNVGEDITVAKNDTPAKEFPPDNEFEKRMRAEVVPANEIGVTFADVGALDDIKELLQDEVMLPFRRPDLFKGGLLKPYRGILLFGPPGTGKTMLAKAIANEVGASFINVSMSTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRSRYGEHEAMRKIKNEFMTHWDGLLSKPGEKILVLAATNRPFDLDEAIIRRFERRIMVDLPSAETREMILKTLLAKENFENIDFKELSTMTEGYSGSDLKNLCTTAAYGPVRELLQQERLKEKVEEKKVEAEVQSSEGASNAKEDQVITLRPLNMKDMRQAKSLVAASFAAEGSIMSELKQWNELYGEGGSRKKQQLTYFL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2144 784 ProSitePatterns AAA-protein family signature. 615 634 IPR003960 GO:0005524|GO:0016887
Apr8g2144 784 Gene3D - 471 643 IPR027417 -
Apr8g2144 784 MobiDBLite consensus disorder prediction 181 221 - -
Apr8g2144 784 Pfam ATPase family associated with various cellular activities (AAA) 512 642 IPR003959 GO:0005524|GO:0016887
Apr8g2144 784 Coils Coil 697 720 - -
Apr8g2144 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 698 IPR027417 -
Apr8g2144 784 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 784 - -
Apr8g2144 784 MobiDBLite consensus disorder prediction 181 223 - -
Apr8g2144 784 Pfam AAA+ lid domain 664 700 IPR041569 -
Apr8g2144 784 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 784 - -
Apr8g2144 784 CDD AAA 506 643 - -
Apr8g2144 784 Gene3D - 644 718 - -
Apr8g2144 784 SMART AAA_5 508 645 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2144 Apr-Chr8 32059712 32066994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2144 472 703 Calmodulin-binding Proteins AT3G56690 38.559 1.04e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2144 - - gmx:100793760 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2144 8 32059712 32066994 Apr6g0612 6 8858015 8865928 PCT