Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2128 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCGAGCCTTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTCCATTTAGACTTTCCAATGATGAATTATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTTTGAAGCTATCATCCGTCTCAAGAATTATTCCTGGACAAAGAACTATTTGCAAGGATAAAGTTGAGGCAGAGGTGTGGATTGCTGGTCTCAAGGGATTGATATCTTCTGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGATAGTAGAGAATTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGTGACATCAGTTCTCCTGACGTTTCTGTTAGTCAGCCAAACACGTCTCCAAATTCCTTTCAGTCAGAGAATACCTTAAATTTTGAAAGGTCACATGCACTATCAAATCCATTAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCTGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATACTGTGAAAGTTGGTGCTGATAAAAATGCCAGTTATTTTAGTCCTAGGGCAGATATTCTCCTCCCCAGGCCACTGGAGTCCAATGTGGTCTTAGATGTGCTTCAAATAGCATGTGGTGTAAAGCATGCTGCTCTGGTGACAAGGCAAGGTGAACTTTTTACTTGGGGTGAAGAATCCGGAGGAAGGCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGTTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAATTCCATTCCTGTGCTGTTACCATGGCTGGGGAACTATATACATGGGGTGATGGTACACATAATGCTGGCCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTTCAGGTCCACTAGAGGGCCTTCAAGTTGCTATAGTCACTTGTGGTCCATGGCACACAGCCCTGATAACTTCAACCGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGACCGGGAAAGTGTTTCATATCCTAGGGAAGTAGAATCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCACACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCAAGTGCAAGTTTATCGTCTGGTAAGTTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGGCTTGAACCAACTTGTGTCCCTTCACTTATTGATTATAATTTCCATAGAATTGCTTGTGGGCACAGTTTGACAGTAGGTCTGACTACGTCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAACTTGGGAATCCCCAGTCTGATGGAAAGCTGCCCTGTTTGGTTGAAGACAAGCTTGCAGGAGAATCTGTTGAAGAAATTGCTTGTGGGGCTTATCATGTTACTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAGGATCGAAAAACACCAACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCTATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAATGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTCGTGCACTGCCATGCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCAGAATCTGGCAATAATAATCGGAGGAATGCCATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAAAAGTCTGAGCTAAGATTGTCAAAGACAGCCGTTCCTTCTAATATGGATTTGATTAAGCAGTTAGATAGTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCGCTGGCTCGTGCCTCACAAGCACCATCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATTGATCTGAAGCGAACAGCTCCAAGACCTGTTCTTACATCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCACCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGCATTGCTGATAGTTTAAAGAAAACAAACGAACTTTTGAATCAAGAAGTGCTGAAGTTACGTGCTCAGGTTGAGACCTTGAGTCAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGGCACTAGCTGCTGACGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAGGATCTGGCTGAGAGGCTTCCTCCTGGTGTCTATGATGCCGAGAACATCAGACCAGCTTACCTGCCAAATGGTCAGGAGCCAAATGGCATCCACTATCCAGACTTAAATGGGGAACGCTACACCAGAGCCGAGTCAATTAGTGGCTCTAGTTTGGCTTCCATAGGATTTGAAGCCTCTCTGATGAATAGAACTGAGGGTACTTTGCATGGAAGCTATGGAACTAATCTGAACCAGCAAATTCGGGGGGTAGTTACCTCAAATGGCACAGATGATTACCCTGATGTTAAATTACCAAATGGCAGTGGTGCAATTCAGACAGGCAGCAGTATTATGTCAGATACTGTTGATGGTAGGGATTCTGGGAATTTCCAAGACGATGAGAACGGTTTGAGATCAAGGAATGCAGCATCGCCTGCTAATAACAGTCAAATTGAGGCAGAATGGATTGAACAATACGAACCTGGTGTCTATATAACACTGGTCGCCCTGCGTGATGGAACAAGAGACCTGAAGCGAGTGCGTTTCAGCCGGAGAAGATTTGGTGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGATAAGGTATACGAAAGGTACAATGTTCGTAGCACTGACAAGTCTGCCAGCCAGGCGGCCCATAGGGCTGAGGGTGCCAGTTCACCTGTTTTATAA 3273 0.4445 MADLVSYRNADRDIDRALIALKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGERSLKLSSVSRIIPGQRTICKDKVEAEVWIAGLKGLISSGQGGRSKIDGWSDGGLYLDDSRELTSNSPSESSVSASRDISSPDVSVSQPNTSPNSFQSENTLNFERSHALSNPLNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENTVKVGADKNASYFSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEALVSTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVAIVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASLSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESVEEIACGAYHVTVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHACSSRKALRAALAPNPGKPYRVCDSCYVKLNKVAESGNNNRRNAMPRLSGENKDRLEKSELRLSKTAVPSNMDLIKQLDSKAAKQGKKADTFSLARASQAPSLLQLKDVVLSTAIDLKRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLSQRCELQELELQRSAKKTQEAMALAADESAKSKAAKEVIKSLTAQLKDLAERLPPGVYDAENIRPAYLPNGQEPNGIHYPDLNGERYTRAESISGSSLASIGFEASLMNRTEGTLHGSYGTNLNQQIRGVVTSNGTDDYPDVKLPNGSGAIQTGSSIMSDTVDGRDSGNFQDDENGLRSRNAASPANNSQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSASQAAHRAEGASSPVL* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2128 1090 MobiDBLite consensus disorder prediction 754 786 - -
Apr8g2128 1090 Pfam Transcription factor regulating root and shoot growth via Pin3 1011 1066 IPR013591 -
Apr8g2128 1090 Coils Coil 795 836 - -
Apr8g2128 1090 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 599 661 IPR017455 -
Apr8g2128 1090 MobiDBLite consensus disorder prediction 967 984 - -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 207 268 IPR000408 -
Apr8g2128 1090 MobiDBLite consensus disorder prediction 667 687 - -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 375 IPR000408 -
Apr8g2128 1090 Coils Coil 851 871 - -
Apr8g2128 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 668 IPR013083 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 376 424 IPR000408 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 490 538 IPR000408 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 269 317 IPR000408 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 438 485 IPR000408 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 544 591 IPR000408 -
Apr8g2128 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 321 372 IPR000408 -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 427 IPR000408 -
Apr8g2128 1090 Pfam Transcription factor BRX N-terminal domain 846 881 IPR027988 -
Apr8g2128 1090 CDD FYVE_like_SF 604 657 - -
Apr8g2128 1090 Gene3D - 13 76 IPR011993 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 252 265 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 378 392 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 480 498 IPR000408 -
Apr8g2128 1090 PRINTS Chromosome condensation regulator RCC1 signature 538 559 IPR000408 -
Apr8g2128 1090 SUPERFAMILY RCC1/BLIP-II 206 596 IPR009091 -
Apr8g2128 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 362 372 IPR000408 -
Apr8g2128 1090 MobiDBLite consensus disorder prediction 755 773 - -
Apr8g2128 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Apr8g2128 1090 Gene3D - 152 431 IPR009091 -
Apr8g2128 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 76 1073 - -
Apr8g2128 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 75 - -
Apr8g2128 1090 Pfam FYVE zinc finger 595 661 IPR000306 GO:0046872
Apr8g2128 1090 MobiDBLite consensus disorder prediction 1071 1090 - -
Apr8g2128 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 255 265 IPR000408 -
Apr8g2128 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 76 1073 - -
Apr8g2128 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 75 - -
Apr8g2128 1090 SUPERFAMILY FYVE/PHD zinc finger 595 668 IPR011011 -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Apr8g2128 1090 SUPERFAMILY PH domain-like 14 94 - -
Apr8g2128 1090 SMART fyve_4 593 662 IPR000306 GO:0046872
Apr8g2128 1090 MobiDBLite consensus disorder prediction 957 1006 - -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Apr8g2128 1090 MobiDBLite consensus disorder prediction 118 157 - -
Apr8g2128 1090 ProSiteProfiles BRX domain profile. 1012 1067 IPR013591 -
Apr8g2128 1090 Gene3D - 432 591 IPR009091 -
Apr8g2128 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 320 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2128 Apr-Chr8 31876053 31883979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2128 1013 1086 Major Intrinsic Protein MIP AT1G31880 48.649 6.75e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2128 - - gmx:100783270 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1262 6 17353828 17363833 Apr8g2128 8 31876053 31883979 PCT