Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2115 ATGCTTGAGGACTCAGCTGTGCTAGGAGGAGGAGGTGGCGGCAGCGAAGGTGGTGCCTCCGGCGATGCAGTGGCGGCCACAGGTGGCGGTGGCGGAGTTGGATCAAATTCAGGGGATGATGAGAAGGGAAGAATCGAAGAGGGTGAACGTAGCTTCGGTGGCAACCGGTGGCCACGAGAAGAGACTTTGGCTTTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTCTCCAGGAAAATGGCAGAGCATGGGTATCACAGAAGTTCGAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAATCAGATGGCAAAACATATCGTTTCTTTGATCAATTAGAAGCCCTTGAGAACCACCCTCCAACATCTCATTCCCCCAACCCATCATCAAAACCACAACCCCTATCAACACGAGTAGTAGCAGCAACAACAACAGTATCACTACCAACCACTTCTACATCACCACCAACAACAGTGCCAATGCTACCAGTGTCCAACACCACTCTCACTACTAGTGTCCCCCATGTCACTGTTCCATCAACAACAACGCTCCCCATAGCCATGCCTCAAGGCATTGTCACTGCCCCATCAATAAACCTCACAAACCCTTCTTACCTTCCAACAAACCCTACAAATTTCCCACCACCATCAACAGCAAACCCTACCACCAACGCAACCCCACCCTCTTTCCCAGCCGATACCTTCTCTAATTCTAGCTCCTCCTCAACCTCCTCCGATGAAACATTGGAAGGAAGGCGGAAGAGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGACTTACAAAAGAGGTTCTTGGAAGCCATAGAGAAACGAGAACACGAGAGAATGGTAAGAGAAGAATCATGGAGAGTACAAGAAATGCAAAGAATCAATACGGAAAGGGAAATTCTAGCACAAGAAAGGTCCATAGCCGCAGCCAAAGACGCTGCCGTAATGTCATTCTTGCAAAAAATAGCCGAACAACAAAACCTTGGTCAAGCATTGAGTAACATCAACATCGTACAAGCACAAGCACAAGCAGTGTCTCAGCCACAATCAAATGCTGCAGCAGCACCAGTGCAACAACAACCACCACCAGTAGTTGCACAACCCGTTGTTCTACCCGTGGTCCCACAACAACAAGTGACAAATATGGAAATAGTGAAAGCTGACAACAACGGTGAGAATTTCATGCCAGCGAGTTCTTCGAGGTGGCCAAAAGTGGAGGTTCAGGCGTTGATAAAGCTGAGAACAAGCCTTGACGCAAAGTATCAAGAGAATGGACCAAAAGGGCCTCTTTGGGAGGAGATCTCTAACTCAATGAAGAAGCTTGGGTACAACAGAAACCCCAAAAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTTAAGGAAAGCAACAAGAAGAGACCAGAAGATTCCAAAACATGTCCTTATTTTCAGCAACTCGATGCGTTGTATAGAGAGAAGAACAAGCTCGAGAACCAACAAGTGCCCAAGCCGCCGGACTCCACGGTGGCACCGTTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGCACGACCTAATGAGGGAGAGAGAGGTCACAATGCAAGACGTGGAGAACGAAGAGGATGATGAAGAGGAAGAGAGAGAGGGAGAGGAAGAAGAAGACGATGAAGAGGATGAAGAAGGCGGTGGAGGTGGCGGTGGTGGTAACTATGAGATAGTGGCAAACAAGAATAATGCTTCTTCAGTGGGTGCTTCAGCTGAGTAG 1875 0.4837 MLEDSAVLGGGGGGSEGGASGDAVAATGGGGGVGSNSGDDEKGRIEEGERSFGGNRWPREETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAEHGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLEALENHPPTSHSPNPSSKPQPLSTRVVAATTTVSLPTTSTSPPTTVPMLPVSNTTLTTSVPHVTVPSTTTLPIAMPQGIVTAPSINLTNPSYLPTNPTNFPPPSTANPTTNATPPSFPADTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEDLQKRFLEAIEKREHERMVREESWRVQEMQRINTEREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNINIVQAQAQAVSQPQSNAAAAPVQQQPPPVVAQPVVLPVVPQQQVTNMEIVKADNNGENFMPASSSRWPKVEVQALIKLRTSLDAKYQENGPKGPLWEEISNSMKKLGYNRNPKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFQQLDALYREKNKLENQQVPKPPDSTVAPLMVRPEQQWPPQHDLMREREVTMQDVENEEDDEEEEREGEEEEDDEEDEEGGGGGGGGNYEIVANKNNASSVGASAE* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2115 624 MobiDBLite consensus disorder prediction 143 163 - -
Apr8g2115 624 CDD GT1 438 503 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 248 271 - -
Apr8g2115 624 SMART sant 436 498 IPR001005 -
Apr8g2115 624 SMART sant 53 115 IPR001005 -
Apr8g2115 624 MobiDBLite consensus disorder prediction 228 280 - -
Apr8g2115 624 Gene3D - 57 118 - -
Apr8g2115 624 Gene3D - 440 501 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 39 59 - -
Apr8g2115 624 ProSiteProfiles Myb-like domain profile. 55 113 IPR001005 -
Apr8g2115 624 Coils Coil 285 312 - -
Apr8g2115 624 Coils Coil 563 597 - -
Apr8g2115 624 Pfam Myb/SANT-like DNA-binding domain 438 525 IPR044822 -
Apr8g2115 624 Pfam Myb/SANT-like DNA-binding domain 55 141 IPR044822 -
Apr8g2115 624 MobiDBLite consensus disorder prediction 142 163 - -
Apr8g2115 624 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 18 613 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 610 624 - -
Apr8g2115 624 ProSiteProfiles Myb-like domain profile. 438 496 IPR001005 -
Apr8g2115 624 PANTHER - 18 613 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 1 59 - -
Apr8g2115 624 CDD GT1 55 120 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 572 599 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 551 624 - -
Apr8g2115 624 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2115 Apr-Chr8 31690689 31694001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2115 53 555 Trihelix Transcription Factor Family AT1G76890 50.575 1.89e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr8g2115 Myb_DNA-bind_4 2.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2115 - - pvu:PHAVU_007G079700g 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1290 6 17890547 17894060 Apr8g2115 8 31690689 31694001 PCT