Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2114 ATGCAGCAGCTTGGAGAAGAGACCTCCTCCGGCGAGGCCGTGCCGGCGCATGACGGCGGCGAGGTGATTATGGTGGATGCAAATTCCGGTGAAGAGAAGGGAATAAAGGAGGGTGTTGCAGAAGAAGAAGGTGACAAGATCGGCAACTCATGTGGTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCACTCTTGAAGATAAGGTCTGATATGGATGCTGTATTTCGAGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGAAAACTAGGAGAACTGGGTTATCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAATGTATACAAATACCACAAAAGAACCAAAGAGAGTAGAAGTGGGAAACATGAAGGGAAAACCTACAAGTTTTTCGATCAATTACAAGCCCTTGAAAACCAATTCTCAGTCTCTTACCCGCCAAAACCACAACCCACTTTGGCAACAACAAACACAGTGGCATTACCACCACCAACAAGGCCTAGTGACACAATAGCAATCTCTTATGTCACCACCACTGTTCCATCCACAAACCCTACAGTCATATCTCCCTCGCCACCACCACCAACCAATGCCACCACAACCACCATCACTTCTCCAACAGTAGTAACCAACTCTAGAAACCCATCACAACCCAACCACAATAACAACACCACCAACAACAACATCCCTTTTTCTTTGCCCAACATGAACAATCTTTTCTCAACCACTTCAACCTCTTCTTCCACTGCTTCAGATGAAGACTTGGAAGAGAAGTACAGAAAGAAAAGAAAGTGGAAGGACTACTTCAGAAGGCTCACGAGGCAGGTCTTGGCCAAGCAAGAGGAAATGCAGAAAAGGTTCTTGGAAGCCATAGACAAAAGGGAAAGAGACCACGTGGCACAACAAGAGTCTTGGAGGATGCAGGAAATGACAAGAATCAATAGAGAACACGAACTTCTTATCCAAGAAAGATCATCAGCGGCAGCAAAAAATGCAGCAGTCATTGCATTCTTGCAAAAACTATCTGGTCAGCCGCAAAATCCCACAACACAGGCCGGTGCCAATTTCCTTCAACCACCGCCGCCGCCGCCGCCGCCCCCACCTGTATCACAAACACAACCACAACAGCAAGTTCCACAAGCACCACTTGTGATGTCAAATAACAACAACAATATTGAAATTCAAAAATTGAATAATGGTCACAGTGCTATTACTACTACAGCTTCTACTCCATTGAACTCTTCTTCCAGGTGGCCAAAGTCAGAAGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGAAGCCAAGTATCAAGAAAATGGACCAAAGGCTCCACTGTGGGAGGATATATCAGCAGGGATGTTGAGGCTCGGCTACAACAGGAGTGCCAAAAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAGAGTAACAAGCAAAGGCGTGACGATAGCAAGACATGTCCCTATTTTCATGAACTTGATGCTCTATACAAAGAAAAGAGCAGATTTGGTGTTTCATTCCACAATATGAAGCCAAATGAGATGATGGAGCCTTTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCCTCTCAATATGAAGAGAAAGAGAACAATGAAAGTCAATATGAAACAAAAGAAAGAGAGGAAGAAGATGCAGAAGAATTCGAAGAAGAAGATGATGATGATGATGATGACAATGAAGAGGGAGAGAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1818 0.4472 MQQLGEETSSGEAVPAHDGGEVIMVDANSGEEKGIKEGVAEEEGDKIGNSCGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLGELGYHRSAKKCKEKFENVYKYHKRTKESRSGKHEGKTYKFFDQLQALENQFSVSYPPKPQPTLATTNTVALPPPTRPSDTIAISYVTTTVPSTNPTVISPSPPPPTNATTTTITSPTVVTNSRNPSQPNHNNNTTNNNIPFSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKRERDHVAQQESWRMQEMTRINREHELLIQERSSAAAKNAAVIAFLQKLSGQPQNPTTQAGANFLQPPPPPPPPPPVSQTQPQQQVPQAPLVMSNNNNNIEIQKLNNGHSAITTTASTPLNSSSRWPKSEVHALIRLRTSLEAKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQRRDDSKTCPYFHELDALYKEKSRFGVSFHNMKPNEMMEPLMVQPEQQWRPPSQYEEKENNESQYETKEREEEDAEEFEEEDDDDDDDNEEGESVEDEGGNRYEIATNKLSSVDTVE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2114 605 ProSiteProfiles Myb-like domain profile. 54 112 IPR001005 -
Apr8g2114 605 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 20 595 - -
Apr8g2114 605 PANTHER - 20 595 - -
Apr8g2114 605 CDD GT1 419 484 - -
Apr8g2114 605 Pfam Myb/SANT-like DNA-binding domain 54 140 IPR044822 -
Apr8g2114 605 Pfam Myb/SANT-like DNA-binding domain 419 506 IPR044822 -
Apr8g2114 605 ProSiteProfiles Myb-like domain profile. 413 477 IPR001005 -
Apr8g2114 605 MobiDBLite consensus disorder prediction 534 605 - -
Apr8g2114 605 Gene3D - 421 482 - -
Apr8g2114 605 Gene3D - 56 117 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 557 583 - -
Apr8g2114 605 SMART sant 417 479 IPR001005 -
Apr8g2114 605 SMART sant 52 114 IPR001005 -
Apr8g2114 605 CDD GT1 54 119 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 540 556 - -
Apr8g2114 605 Coils Coil 543 576 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 358 376 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 1 53 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 347 382 - -
Apr8g2114 605 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2114 Apr-Chr8 31664040 31667411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2114 48 560 Trihelix Transcription Factor Family AT1G76890 48.037 1.45e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr8g2114 Myb_DNA-bind_4 6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2114 - - gmx:100799041 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1292 6 17976372 17979869 Apr8g2114 8 31664040 31667411 PCT