Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2113 ATGTCCTTCCGCAGTATAGTTCGAGATGTAAGGGATGGATTTGGAAGCTTGTCAAGGAGGAGTTTTGAGTCACGAAGTTCGGTTCATGAGTTGCAGGAGCAGCCACCAGTTATACAGAATAGTCGATGGGCTAGCCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGATTGGAAACAAGTGAGAGTACATGGCCTGGCCGTAAACATGTGGTTGCATGTGCTGCTGTGTGCAAGGCCTGGAGAGAAATGTGCAAAGAGATTGTCAGCAGTCCTGAATTCTGTGGGAAGATTACCTTCCCCATTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTTTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGTACTTACATTGGAAAATTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACGCAGCCTCCCTACAATAATGCTCAGCTGTCTCCACCAGGCCGCAGCCGTAGGTTTTCCACAAAGGTTTCACCAAAGGTCCCTAGTGGCAGTTACAATATTGCCCAGGTCACCTACGAGTTGAATGTCCTTGGTACTAGGGGCCCTCGAAGGATGAACTGCACCATGTACTCAATTCCTGCATCATCCCTTGAGCCCGGTGGCACTGTCCCAGGCCAACCAGAGCTCCTTCCCCGTGCCCTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACCGAGTTTAGCAGCTCAAGGTTCTCAGACATAATGGGAACTGGCAATGAAGAGGAGGGAAAGGAGAGACCACTGGTTCTTAAGAACAAGTCTCCAAGATGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTCAGAGGAAGGGTGACTGTTGCCTCGGTCAAGAATTTTCAGCTGATTGCTGCAACGCAGCCTGCAGCTGTTGCTCCTGCAGGAACTGGACCTACACCTTCTCAGCCAACAACGCAGTCTGATCACGACAAGATTATTCTTCAATTTGGCAAAGTTGGCAAGGATATGTTTACAATGGACTATCGATACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTCGACACAAAACTGGCATGTGAATAG 1257 0.4662 MSFRSIVRDVRDGFGSLSRRSFESRSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLETSESTWPGRKHVVACAAVCKAWREMCKEIVSSPEFCGKITFPISLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFSTKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSLEPGGTVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSSRFSDIMGTGNEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAVAPAGTGPTPSQPTTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2113 418 Pfam Tub family 104 413 IPR000007 -
Apr8g2113 418 PANTHER TUBBY-RELATED 1 418 - -
Apr8g2113 418 PRINTS Tubby superfamily signature 159 175 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 175 199 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 316 333 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 334 350 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Apr8g2113 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Apr8g2113 418 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 418 - -
Apr8g2113 418 Gene3D - 38 91 - -
Apr8g2113 418 SUPERFAMILY Tubby C-terminal domain-like 92 418 IPR025659 -
Apr8g2113 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Apr8g2113 418 Gene3D Tubby Protein; Chain A 101 418 IPR025659 -
Apr8g2113 418 SUPERFAMILY F-box domain 35 87 IPR036047 GO:0005515
Apr8g2113 418 ProSitePatterns Tub family signature 1. 334 347 IPR018066 -
Apr8g2113 418 Pfam F-box domain 43 90 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2113 Apr-Chr8 31642398 31646300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2113 1 418 TUB Transcription Factor Family AT1G76900 68.845 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr8g2113 Tub 2.2e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2113 K19600 - gmx:100817532 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1294 6 18150933 18155334 Apr8g2113 8 31642398 31646300 PCT