Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2100 ATGTTTTTCTTTTTAAGGAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCAAGGCACGGTTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGACCCAACCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTCGTGAGGTCGAGAAGCCGGGATCAAAACTTCACAAGAAGGAGACTTGCGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATAGTTGGTGTTGTGGGTTATGTGAAAACTCCTCGCGGTCTGCGCACTTTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATCAAGAGAAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAATACTCAAAGCAGTATGAAACAGAAGAAGGGAAGAAAAATATTGAGGCACAGCTTGAGAAATTGAAGAAGTATGCTACTGTTGTCCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAGGGGTTGAAACAAAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGGACTATTGCTCAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGATATCATAGGGGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTACCCGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTCACTGTTGCCAGGGCTGGTCAAAATGGATACCACCACAGAACTGAGTTGAACAAGAAGATCTACAAGCTTGGCAAAGGTGGAGATGAGTCTCACACTGCTATTACTGAGTTCGATAGGACTGAGAAAGACATTACACCAATGGGTGGTTTCCCACACTATGGTGTTGTGAAGGATGATTATCTCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTTCTTACATTGCGCCAATCCCTGCTGAAGCAGACTTCTCGTGTTGCACTGGAGGAGATCAAACTCAAGTTCATTGACACCTCTTCAAAGTTTGGGCATGGCCGCTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAAGCATAA 1197 0.4628 MFFFLRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKGGDESHTAITEFDRTEKDITPMGGFPHYGVVKDDYLMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2100 398 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 10 398 IPR045077 GO:0003735|GO:0005840|GO:0006412
Apr8g2100 398 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 10 398 - -
Apr8g2100 398 Pfam Ribosomal protein L3 10 379 IPR000597 GO:0003735|GO:0005840|GO:0006412
Apr8g2100 398 Gene3D Ribosomal protein L3, domain 3 10 283 IPR044892 -
Apr8g2100 398 Gene3D Translation factors 53 394 - -
Apr8g2100 398 SUPERFAMILY Translation proteins 13 379 IPR009000 -
Apr8g2100 398 Gene3D - 92 216 - -
Apr8g2100 398 ProSitePatterns Ribosomal protein L3 signature. 221 244 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2100 Apr-Chr8 31544322 31547803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2100 10 396 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 700