Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2100 ATGTTTTTCTTTTTAAGGAGGAGAAGGATGTCTCACAGGAAGTTCGAACACCCAAGGCACGGTTCACTGGGATTTCTCCCTAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGACCCAACCAAGGCACCCAAGCTCACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTCGTGAGGTCGAGAAGCCGGGATCAAAACTTCACAAGAAGGAGACTTGCGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATAGTTGGTGTTGTGGGTTATGTGAAAACTCCTCGCGGTCTGCGCACTTTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATCAAGAGAAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAATACTCAAAGCAGTATGAAACAGAAGAAGGGAAGAAAAATATTGAGGCACAGCTTGAGAAATTGAAGAAGTATGCTACTGTTGTCCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAGGGGTTGAAACAAAAGAAAGCCCATATCATGGAAATTCAGGTTAATGGTGGGACTATTGCTCAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAGATGATTGATATCATAGGGGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTACCCGCCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCTAGAGTTTCCTTCACTGTTGCCAGGGCTGGTCAAAATGGATACCACCACAGAACTGAGTTGAACAAGAAGATCTACAAGCTTGGCAAAGGTGGAGATGAGTCTCACACTGCTATTACTGAGTTCGATAGGACTGAGAAAGACATTACACCAATGGGTGGTTTCCCACACTATGGTGTTGTGAAGGATGATTATCTCATGGTCAAGGGATGCTGTGTTGGTCCCAAGAAGAGGGTTCTTACATTGCGCCAATCCCTGCTGAAGCAGACTTCTCGTGTTGCACTGGAGGAGATCAAACTCAAGTTCATTGACACCTCTTCAAAGTTTGGGCATGGCCGCTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAAGCATAA 1197 0.4628 MFFFLRRRRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKAPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFTKYSKQYETEEGKKNIEAQLEKLKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKGGDESHTAITEFDRTEKDITPMGGFPHYGVVKDDYLMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2100 398 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 10 398 IPR045077 GO:0003735|GO:0005840|GO:0006412
Apr8g2100 398 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 10 398 - -
Apr8g2100 398 Pfam Ribosomal protein L3 10 379 IPR000597 GO:0003735|GO:0005840|GO:0006412
Apr8g2100 398 Gene3D Ribosomal protein L3, domain 3 10 283 IPR044892 -
Apr8g2100 398 Gene3D Translation factors 53 394 - -
Apr8g2100 398 SUPERFAMILY Translation proteins 13 379 IPR009000 -
Apr8g2100 398 Gene3D - 92 216 - -
Apr8g2100 398 ProSitePatterns Ribosomal protein L3 signature. 221 244 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2100 Apr-Chr8 31544322 31547803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2100 10 396 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2100 K02925 K10999 gmx:100806786 782.711