Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2097 ATGTGCTTGCTAACGGTGGCGCACCAAGGAGGTTCGGGTTCCGGTTCAGGTTCGGGCAAGTTCGTGAGGTTCACGAGCGGCGATGAGGAAGTGGAAGACCCTTTTGGACAAGAAGGTGGAAGCTCAGGTCCATCAATGGGAGGGACAGGGAGTATGGTTTCGGTTCCGAGCCAAGTGGTGTCAGGCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGGCAGATTAACACCGAGTGGGTCCCCGGAAGTGGTTATCCTATGATGTCAGGTTTTATGCATGTCTCTTCTCCTCGTTTGTCTTCTTCTTCTTCTTCTGCCCCTCTTTTGGGGGTTGGACACAAAAGAGCGCGTGAAGATCACACTGTTTCTTCTCAGCAATTAATTCCACTCTATGGAACCGCCACTCCTCACTTCTCACTACCTTCATCATCAGTGACAGAAGAAGCTACAACTGTTGCCACTACAACGCAAGGGAGTGAAACGGCGTCGTATGAAGAGAGCGGTGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGACCGTGGGGGAAATGGGCCGCGGAAATTCGCGATCCTCACAAAGCAGCGAGAGTGTGGCTTGGAACGTTCGACACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTGAGGTTCAGAGGTAACAGAGCCAAACTCAACTTCCCTGAAAACGTTGCTGCAGTTCGACCCGATTTTCCGCCCAGTACGATCGCCGTTTCTGCTTCCCCGGCGACCCATTTTTCGCCGGCGGTGATGCAGGGCTCGCAGTTTCAGGGATCATCCGATTTTATGAGAGATTACTGGGAATACTCTCAGCTTCTGAGAGGCACAGGGGACTTCCATGGACTCGAGCAGTGGTTCTATGATTCGCAAATGGCGCAGATTCAGTCTTCCTCTTCGTTGTTATCGCCGTCGCTCTTTTTGTCGTCGTCTTCGTCCCAAACTGCATTTTCACCCTCCTCTGCTTCGTTTCCTCTGTTTTCTAGTCAGCAAATGGGGTTTTTCCGGCCGCCGGGAGACTCCTCTCACGGCGGTGGAGACGGTAGTGGCGGGTCGGAGTTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCCCCTGGTTGA 1134 0.5362 MCLLTVAHQGGSGSGSGSGKFVRFTSGDEEVEDPFGQEGGSSGPSMGGTGSMVSVPSQVVSGSGSGSGSGSGQINTEWVPGSGYPMMSGFMHVSSPRLSSSSSSAPLLGVGHKRAREDHTVSSQQLIPLYGTATPHFSLPSSSVTEEATTVATTTQGSETASYEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVAAVRPDFPPSTIAVSASPATHFSPAVMQGSQFQGSSDFMRDYWEYSQLLRGTGDFHGLEQWFYDSQMAQIQSSSSLLSPSLFLSSSSSQTAFSPSSASFPLFSSQQMGFFRPPGDSSHGGGDGSGGSEFPPSTWSDTSGYPPPPG* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2097 377 MobiDBLite consensus disorder prediction 30 77 - -
Apr8g2097 377 PANTHER DNA-BINDING DOMAIN 48 349 IPR044808 GO:0003700|GO:0009873
Apr8g2097 377 SUPERFAMILY DNA-binding domain 172 230 IPR016177 GO:0003677
Apr8g2097 377 SMART rav1_2 172 235 IPR001471 GO:0003700|GO:0006355
Apr8g2097 377 MobiDBLite consensus disorder prediction 140 171 - -
Apr8g2097 377 MobiDBLite consensus disorder prediction 337 377 - -
Apr8g2097 377 MobiDBLite consensus disorder prediction 42 77 - -
Apr8g2097 377 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 48 349 - -
Apr8g2097 377 Gene3D AP2/ERF domain 171 231 IPR036955 GO:0003700|GO:0006355
Apr8g2097 377 MobiDBLite consensus disorder prediction 140 162 - -
Apr8g2097 377 Pfam AP2 domain 172 221 IPR001471 GO:0003700|GO:0006355
Apr8g2097 377 CDD AP2 180 231 IPR001471 GO:0003700|GO:0006355
Apr8g2097 377 ProSiteProfiles AP2/ERF domain profile. 172 229 IPR001471 GO:0003700|GO:0006355
Apr8g2097 377 PRINTS Ethylene responsive element binding protein signature 173 184 IPR001471 GO:0003700|GO:0006355
Apr8g2097 377 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2097 Apr-Chr8 31506385 31508717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2097 156 232 AP2-EREBP Transcription Factor Family AT2G33710 72.727 8.05e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g2097 AP2 7.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2097 - - aprc:113873061 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1316 6 18709066 18710936 Apr8g2097 8 31506385 31508717 PCT