Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2094 ATGGATCCGCATGCTGAAGAGTTGCCTCCTCAGTACATACATATAAGTCAGAATGAATTCTTTTTGCGAAGACATAAGAAGCAGAAGGAAGAGGATATCGCTGTATGTGAATGCAGATATGATGCTGATGACCCTGATAGTCCATGTGGGGATAGCTGTCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGGTATCTTATGCAAAAATCAGAAATTTCAGAAGTGCGAATATGCTAAAACAAAGTTGTTTAAAACTGAAGGTCGTGGGTGGGGCCTTTTGGCTGATGAAAACATCAAGGCAGGACAATTTCTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTGCCTTAATGCTTCTGAATCCATTGATGCAACCAGAAAAGGAAGCCTTGCCAGATTTATAAATCATTCATGTCAACCAAACTGTGAGACAAGAAAATGGAATGTGTTGGGAGAAATACGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCGAAGGTTCGCTGCCTTTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTATATATGACTCTGCAGAAGATGAACCACTGTCAAACGTTAATGGACAAACTGAACATTCTTTGGATGTTATACTTAAAGCTGAGCAACTACCGGAGCCCACTGCTTTTCATGTTCAGCAACTTGATTTAGTTCAGATGAAAGGTTTAGATGTCAAGAAGATTAAAACTGATGTTGATGAGGATATGAACTTGTACTCCCAGGATACTGAACAGGCCCTTTCACAAAAGAATGCAATGATATCACGTGTCCGAAGTAATACAGAAGGCAGAAACTATCGCATTGGACCTAGGTCCATATCTACCAAAAGAGCAAAGGCTTGTAATGCTGGAAGGTTTAAAAATCTCATACAAAAGAAAATTGATGCAAAGTTTGCAGCTGGCCTCTTGGCATCCAAGGAAGCACAAGAGGAGATTTTGAATAATGAGAAAAGAAAGGATGACGCTACTGCTGCTCTTGATTCCTTATATGATGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATAGCCAAGACAGTGTATCTACGACTGTAGCAGAGAAGTGGATACAAGCTTGCTGCCTGAAATTGAAGGCGGAGTTTGACCTTTACTCGTCAATTGTCAAAAATGTTGCTTGCACTGCTCAAAAGACTCCTAGCCAAGCAAAACCTACTGAAGTAGATATCGAAAATGAAATTAAGCTTTTGACAGGTTGA 1446 0.4004 MDPHAEELPPQYIHISQNEFFLRRHKKQKEEDIAVCECRYDADDPDSPCGDSCLNVLTSTECTPGYCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFLIEYCGEVISWKEAKRRSQAYEIQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPIYDSAEDEPLSNVNGQTEHSLDVILKAEQLPEPTAFHVQQLDLVQMKGLDVKKIKTDVDEDMNLYSQDTEQALSQKNAMISRVRSNTEGRNYRIGPRSISTKRAKACNAGRFKNLIQKKIDAKFAAGLLASKEAQEEILNNEKRKDDATAALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQKTPSQAKPTEVDIENEIKLLTG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2094 481 ProSiteProfiles Post-SET domain profile. 208 224 IPR003616 -
Apr8g2094 481 SUPERFAMILY SET domain 6 221 IPR046341 -
Apr8g2094 481 SMART set_7 84 207 IPR001214 GO:0005515
Apr8g2094 481 SMART shorttest3 31 83 IPR006560 GO:0005634|GO:0018024
Apr8g2094 481 Pfam AWS domain 43 81 IPR006560 GO:0005634|GO:0018024
Apr8g2094 481 ProSiteProfiles AWS domain profile. 31 82 IPR006560 GO:0005634|GO:0018024
Apr8g2094 481 Coils Coil 381 401 - -
Apr8g2094 481 PANTHER SET DOMAIN PROTEINS 3 420 - -
Apr8g2094 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 3 420 - -
Apr8g2094 481 Pfam SET domain 95 201 IPR001214 GO:0005515
Apr8g2094 481 Gene3D SET domain 2 236 IPR046341 -
Apr8g2094 481 ProSiteProfiles SET domain profile. 84 201 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2094 Apr-Chr8 31478728 31485700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2094 66 223 C2H2 Transcription Factor Family AT2G23740 34.254 1.61e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr8g2094 SET 9.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2094 - - gmx:100775294 863.218