Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2073 ATGGCAGCGGCGATTTCTTCACCGATGATTCAGTCTGCGGGAACAATGGCTCCCGCCTCGAATCTGACAGCATTGGGCGGAGGGACATTCGCGAATGCATCGCTGTATGTTGGCGATCTCGAAGGGAATGTGAACGAGGGACAACTTTTTGAACTGTTCGGTCAGGTGGCGCAGGTGGTCTCGATTAGGGTTTGTAGGGATCAGACCAAGCGATCCTCTCTCGGTTACGCATACGTCAACTTCGGCAATGCTCAGGATGCGGCAAATGCCATGGAACTGCTGAACTTCACTCCTCTGAATGGGAGACCCATTCGAATTATGTTTTCTCAACGAGATCCTAGCATTCGGAAAAGTGGATATGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATAACAAGGCATTACATGACACTTTTGCTACCTTTGGCAATGTCCTTTCTTGTAAGGTGGCTCTTGACAGCAGCGGCCAGTCAAAAGGACATGGCTTTGTTCAGTTTGACAATGAAGAGGCTGCCCAGAATGCAATCAAACAGCTGAATGGTATGTTAATTAATGATAAACAAGTCTATGTTGGACTCTTTGTTAGGCGCCAAGAAAGGGCTCCTACAAATGGATCACCAAAGTTCACTAACGTGTACGTGAAAAATTTTCCTGAGACGTATACTGACGAGGACCTGAAGCAGCTATTTAGCCCTTATGGTACAATAACCAGTGCCACTGTTATGACAGATATGAATGGAAAATCTAGATGTTTTGGTTTTGTAAATTTCCAGAGTCCAGATTCTGCGGCTGCTGCAGTTGAGAGGTTGAATGAAACTACCATGAATGATGATAAGGTTTTGTATGTGGGGAGAGCTCAGAGGAAAGCTGAAAGAGAGGCTGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATTAATAGATTTGACAAATTAAAAGGTGCTAATTTGTACTTGAAAAATCTCGATGACAGCTTCAGTGATGAAAAGTTGAAAAATCTATTTTCTGAGTTTGGAACTATAACGTCTTGTAAGGTAATGCTTGATTCACATGGGCATAGCAAGGGATCTGGTTTTGTGGCCTTTTCTTCTCCCGAAGAAGCAACTAAAGCTTTGAATGAAATGAATGGAAAGTTGTTGGGAAGGAAGCCTTTGTATGTTGCTGTGGCACAGCGCAAAGAGGAGAGGAAGGCTCGTCTACAGGCTCACTTTGCTCAAATCCGATCACCTAATGGAATGACACCTCTGCCCACAGGAATTCCTGGATATCATCCTGGCACACCAAGACTTGCCCCTCAACAGATGTATTATGGTCAAGGCACACCTGGCTTCATTCCACCACAGCCTGCTGGATATGGTTTCCAGCACCAAATCTTGCCTGGAATGCGGGGCGTTGCTCCAAATTTCATTATGCCTTACCAACTTCAGAGGCAGGCTCAGCCAGGACAGAGGATGGGATTTCGAAGAAATGGAAATCTTCAACAAGTGCAGCAAAACCAGATGCTACATCGCAACTCCAACCAAGGGTATAGATACATGGCTACCAGTAGAAATGGCATGGACCCATCTTTAGTTCCTCAAGGTCTTGGGGCTCCAATGATGCCGATGACCTTTGATGGTTCTGGAGTTGCTGCAACTTCTAATGATAATCAGCATCCAGGAGCAGTGTCTGCCACACTTGCCTCTGCTTTAGCCTCTGCCACCCCGGAAAATCAACGCATGATGTTGGGTGAACATTTATATCCTCTAGTGGAGCGTCTTACAACAAACCAATATACGGCAAAAGTGACAGGGATGTTGCTTGAAATGGACCAATCAGAGGTAATACATCTGATTGAATCTCCAGAAGACCTGAAGATAAAGGTATCAGAGGCAATGCAGGTCCTGCGTGAAGCTGCATCAGGGACTGAAATCAGTGATCAACTTGGTTCAATGTCTTTAAATGAATAA 1953 0.4491 MAAAISSPMIQSAGTMAPASNLTALGGGTFANASLYVGDLEGNVNEGQLFELFGQVAQVVSIRVCRDQTKRSSLGYAYVNFGNAQDAANAMELLNFTPLNGRPIRIMFSQRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGNVLSCKVALDSSGQSKGHGFVQFDNEEAAQNAIKQLNGMLINDKQVYVGLFVRRQERAPTNGSPKFTNVYVKNFPETYTDEDLKQLFSPYGTITSATVMTDMNGKSRCFGFVNFQSPDSAAAAVERLNETTMNDDKVLYVGRAQRKAEREAELKAKFEQERINRFDKLKGANLYLKNLDDSFSDEKLKNLFSEFGTITSCKVMLDSHGHSKGSGFVAFSSPEEATKALNEMNGKLLGRKPLYVAVAQRKEERKARLQAHFAQIRSPNGMTPLPTGIPGYHPGTPRLAPQQMYYGQGTPGFIPPQPAGYGFQHQILPGMRGVAPNFIMPYQLQRQAQPGQRMGFRRNGNLQQVQQNQMLHRNSNQGYRYMATSRNGMDPSLVPQGLGAPMMPMTFDGSGVAATSNDNQHPGAVSATLASALASATPENQRMMLGEHLYPLVERLTTNQYTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAASGTEISDQLGSMSLNE* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2073 650 CDD RRM1_I_PABPs 34 113 - -
Apr8g2073 650 Gene3D - 122 195 IPR012677 -
Apr8g2073 650 Gene3D - 198 301 IPR012677 -
Apr8g2073 650 Gene3D - 302 405 IPR012677 -
Apr8g2073 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 635 IPR002004 GO:0003723
Apr8g2073 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Apr8g2073 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 386 IPR000504 GO:0003723
Apr8g2073 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Apr8g2073 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Apr8g2073 650 SMART poly_2 569 633 IPR002004 GO:0003723
Apr8g2073 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Apr8g2073 650 Gene3D - 556 635 - -
Apr8g2073 650 SMART rrm2_1 317 389 IPR003954 GO:0003676
Apr8g2073 650 SMART rrm2_1 34 107 IPR003954 GO:0003676
Apr8g2073 650 SMART rrm2_1 122 194 IPR003954 GO:0003676
Apr8g2073 650 SMART rrm2_1 213 285 IPR003954 GO:0003676
Apr8g2073 650 PANTHER POLYADENYLATE-BINDING PROTEIN 24 638 - -
Apr8g2073 650 SUPERFAMILY PABC (PABP) domain 561 634 IPR036053 GO:0003723
Apr8g2073 650 SUPERFAMILY RNA-binding domain, RBD 33 201 IPR035979 GO:0003676
Apr8g2073 650 CDD RRM4_I_PABPs 315 393 - -
Apr8g2073 650 SUPERFAMILY RNA-binding domain, RBD 211 397 IPR035979 GO:0003676
Apr8g2073 650 Gene3D - 29 121 IPR012677 -
Apr8g2073 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Apr8g2073 650 CDD RRM2_I_PABPs 119 194 IPR045305 -
Apr8g2073 650 SMART rrm1_1 122 194 IPR000504 GO:0003723
Apr8g2073 650 SMART rrm1_1 34 107 IPR000504 GO:0003723
Apr8g2073 650 SMART rrm1_1 213 286 IPR000504 GO:0003723
Apr8g2073 650 SMART rrm1_1 317 389 IPR000504 GO:0003723
Apr8g2073 650 PANTHER RNA BINDING PROTEIN 24 638 - -
Apr8g2073 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Apr8g2073 650 Coils Coil 285 305 - -
Apr8g2073 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 631 IPR006515 GO:0003723
Apr8g2073 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Apr8g2073 650 CDD RRM3_I_PABPs 211 291 - -
Apr8g2073 650 Pfam Poly-adenylate binding protein, unique domain 565 630 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2073 Apr-Chr8 31299552 31303510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2073 29 640 Eukaryotic Initiation Factors Gene Family AT1G71770 57.987 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2073 K13126 - gmx:100783163 1093.57