Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2063 ATGGCCACCTCTCAATCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACGGAGGAACAGTTGATTGAAATCTGTCAGGAGGTTGGCCCTGTAGTCTCATTTAGATTGGTTATTGATAGAGAAACTGGGAAACCGAAAGGTTATGGATTCTGCGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAACAGGGTCGTGGTGGGCCTGGAATGATAACAAATGCTGATCCTCACAAACAAGTAGGTGGCCCAGCTGTACATGGGGAAGCGGTTCAGCATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTAGGTGGTGCTCAATTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCGTTGGCACATGATCCTTTAACTCTGCACCTTGCCAAAATGTCCAGGAGTCAGCTCACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAGAACAAGGAACTGGCTTGCCAGTTGTTACTTTCGAGGCCACAATTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTGCTCAATTACAAATGCCAAACCTTAGGATGGTTTCAGATCAAAACTCACAGTCTTCAATGAATGGAGGTCAGGTGGGTCAACCCACGTTGGTTCAAACTCTGTCTGGCCTTCCTCCTCATGGGCAGAGCAAATTACAGGCTGGTTTGACACCTTATGTTCATGAAGGCCAAGTCAGCACCATACCTCATAATCCTTTGGCTCCAAATCAATTAACTGCACTTCCAAAGCCTCCAGTGCAGCCTCGAATTCCCCTTCAGCAACATCCAAGCAACCTTGTACAGCCAGGAACATTGTCAGGGCAGTCTAATTTAATGCTTCCTTCTGTGCGTCCCCAGGGGTCTTTGGGCAGTTTGTCTGTCAGGCCTCCAATTCAACCGGCAACTTCAACTGCATTGAACCAGAAAATGCATGCTTCTATGTTACAGCATTCCACACATGTTGGAAACTCAACTGTAGGACGTAATAACATCCAAATTGTTAGTCCAGATACAAGCTTTCAGCAGCCTGGCCCCTCCGTATCAACAGCTAAAACTATGATTCGTGATTCTTCAGAGTCTTTTGCTCGCCCATCAAAGCTCATGAAGTTGGATGAGGGACGGAACACCTCTATTTCTGCAGGGATTTCAGACATGCCTGTCACCGATGGATCATCCAATATCCTTGGGAGTAGCTCATTGCCTGCACATGCAGCTCCTAAAGCAGAAGTTCGGCAATCTGAGCAACAATCTTCTCAGTCTCAGCTTCCACCTAATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTAACGCCTGAGCAATTGAGTTCCTTGCCACCAGAGCAGCAACAGCAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCTTCATAA 1560 0.4641 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMITNADPHKQVGGPAVHGEAVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELACQLLLSRPQLPKALFQAQIMLGMVTAQLQMPNLRMVSDQNSQSSMNGGQVGQPTLVQTLSGLPPHGQSKLQAGLTPYVHEGQVSTIPHNPLAPNQLTALPKPPVQPRIPLQQHPSNLVQPGTLSGQSNLMLPSVRPQGSLGSLSVRPPIQPATSTALNQKMHASMLQHSTHVGNSTVGRNNIQIVSPDTSFQQPGPSVSTAKTMIRDSSESFARPSKLMKLDEGRNTSISAGISDMPVTDGSSNILGSSSLPAHAAPKAEVRQSEQQSSQSQLPPNVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2063 519 MobiDBLite consensus disorder prediction 386 476 - -
Apr8g2063 519 SUPERFAMILY RNA-binding domain, RBD 5 107 IPR035979 GO:0003676
Apr8g2063 519 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 227 IPR025742 -
Apr8g2063 519 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 514 - -
Apr8g2063 519 Gene3D - 151 231 - -
Apr8g2063 519 MobiDBLite consensus disorder prediction 386 410 - -
Apr8g2063 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Apr8g2063 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Apr8g2063 519 Gene3D - 476 518 IPR038192 -
Apr8g2063 519 Gene3D - 1 116 IPR012677 -
Apr8g2063 519 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 514 - -
Apr8g2063 519 SMART rrm1_1 10 83 IPR000504 GO:0003723
Apr8g2063 519 MobiDBLite consensus disorder prediction 427 450 - -
Apr8g2063 519 MobiDBLite consensus disorder prediction 85 106 - -
Apr8g2063 519 Pfam Transcription termination and cleavage factor C-terminal 481 513 IPR026896 GO:0031124
Apr8g2063 519 CDD RRM_CSTF2_CSTF2T 11 85 - -
Apr8g2063 519 MobiDBLite consensus disorder prediction 461 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2063 Apr-Chr8 31231432 31240631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2063 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.87e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2063 K14407 - gmx:100806489 796.193