Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2054 ATGGAAAACCTTCCCCCATTGATTTACAAACACCCCATTAGAAGAACCTCTAGGCGATCTACAATGTATCTTGGTGTTAGAAAAAGGCCGTGGGGAAGATATGCTGCTGAGTTTAGGAACCCATATACCAAAGAAAGACACTGGCTTGGCACATTTGACACTGCAGAAGAGGCTGCCATAGCTTATGATCTTTCATCTATCAACATTTGTGGCATTGACAATGCTCGAACTAATTTTCATTACCCTTTTGCGTCACTTCCACCACCCCCTTTGTTAATTCCTCCACCACCACCACCACCACCGACTCCAAAGCTGGATCCAAGTGTTGGGCTTTGTCCAGAGATTGATGCTGCTTACGATGGTGATGATGAATCTCTGATTATTGCTTCTATTTTGCAATGTTTTTCTAATTCTGGTAATTGTTCTTTTTAA 432 0.4213 MENLPPLIYKHPIRRTSRRSTMYLGVRKRPWGRYAAEFRNPYTKERHWLGTFDTAEEAAIAYDLSSINICGIDNARTNFHYPFASLPPPPLLIPPPPPPPPTPKLDPSVGLCPEIDAAYDGDDESLIIASILQCFSNSGNCSF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2054 143 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Apr8g2054 143 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 SMART rav1_2 22 86 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 134 - -
Apr8g2054 143 CDD AP2 23 79 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 134 - -
Apr8g2054 143 Pfam AP2 domain 24 66 IPR001471 GO:0003700|GO:0006355
Apr8g2054 143 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2054 Apr-Chr8 31185267 31187086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2054 23 81 AP2-EREBP Transcription Factor Family AT1G12890 74.576 7.69e-26 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g2054 AP2 2.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2054 - - gmx:100816937 228.024