Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2041 ATGGCCGGCAATCCTCCGTCAACTACCTCCATTGCATTTTCTCCCGAGAAATTCAATTTCTCGCCCGATAATCCCTCTCGAATTCCCCTCACTTCGGATCAGCTCAATCACTGTACCCAGGCCCTCGCCTTGTTGAAGGAGAAGCTACGAAATCCTCAGAGGATCGTTCAGGAGTTCGATCACTTGCAGGCGAATAGGATAACGCCCAGCGAAATGAAGAGAAGATGCACCGTAGCTCTTGATGCTGTCAATTTGAGCAAAAATCGATACACCGACGTTTTACCGTTTGACAAGAACAGGGTTGTTCTCAAATCAAGCACAGATTATAGACCTGCAGCACTGGGGTATATTAATGCAAGCTTTGTATCGACCTCCTCCTCTGGAAATGTATCCCAATTTATAGCCACACAAGGCCCACTTCCCCATACTTATGAGGATTTCTGGGAAATGATTATCCAGTGTCACTGCCCTGCAATTGTCATGCTTACTAGGTTGGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTATCAAGCTGAGGATGGACCTAGAGAAGTTGGTAATATTTCTATTATCAGTAAATGGGTGAAAACTACTGCAACTTCACTGGTGCTGCGCCATTTAGAGGTCAACCATAGAGAGGTAGAAGATGCACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCCGACCATGGAGTTCCTGGAGATACCTTTGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTGCCTTCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACGATTCAGAGAATACTTACTGGTGATATGTCTGCTGTAGATATCAGTAACACAGTAGCTGTGTTCAGGTCCCAACGTATTGGAATGGTTCAGACCCAGGCGCAATACATTTTCTGCTATAACGCCATCATAGATGAACTGGAAGACCTTCTATCTCAGCAGCAGTAA 1005 0.4418 MAGNPPSTTSIAFSPEKFNFSPDNPSRIPLTSDQLNHCTQALALLKEKLRNPQRIVQEFDHLQANRITPSEMKRRCTVALDAVNLSKNRYTDVLPFDKNRVVLKSSTDYRPAALGYINASFVSTSSSGNVSQFIATQGPLPHTYEDFWEMIIQCHCPAIVMLTRLVDNYKMVKCGDYYQAEDGPREVGNISIISKWVKTTATSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPGDTFAVREILKRLYHLPSNLGPIVVHCSAGIGRTGTYCTIHNTIQRILTGDMSAVDISNTVAVFRSQRIGMVQTQAQYIFCYNAIIDELEDLLSQQQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2041 334 ProSiteProfiles PTP type protein phosphatase domain profile. 55 325 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 37 327 IPR029021 -
Apr8g2041 334 MobiDBLite consensus disorder prediction 1 23 - -
Apr8g2041 334 CDD PTPc_plant_PTP1 116 320 - -
Apr8g2041 334 Pfam Protein-tyrosine phosphatase 84 323 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 Gene3D Protein tyrosine phosphatase superfamily 30 327 IPR029021 -
Apr8g2041 334 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 12 332 - -
Apr8g2041 334 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 12 332 - -
Apr8g2041 334 Coils Coil 323 334 - -
Apr8g2041 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 PRINTS Protein tyrosine phosphatase signature 308 318 IPR000242 GO:0004725|GO:0006470
Apr8g2041 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
Apr8g2041 334 SMART ptp_7 222 324 IPR003595 -
Apr8g2041 334 SMART PTPc_3 54 327 IPR000242 GO:0004725|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2041 33 329 Protein tyrosine phosphatase (PTP) family AT1G71860 70.707 1.48e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2041 - - gmx:548044 580.482