Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2035 ATGGGTAATTCGAATCTTCCTTTGTTGTTTTTCTTCTCTTTGGTGGCTCTCTCTGTTATGGCTTCCGCCAAGGTTGTGCTGATTGGGAACAATATCACTCTATCCTTCGATGATATTGAAGCTAATTTTGCTCCGACAGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCGCTTGATGCTTGTACAGAACTAACAAATAATGTTGAACACCTTCCCAATGTGAGTTCGACTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCACAAAAGGCTGGCTTCAAAGCTGTAATTGTCTATGATAATGAAGATGGCGGTGTCTTGGTTGCAATGGCAGGTAATTCTGCTGGTATAAGAATACATGCTGTATTTGTATCAAAAGCTTCAGGTGAAATACTGAAGAAATATGCTGGGTTGACTGATGTGGAAATATGGCTCATTCCGACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTGCTAGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTTCGTAGACATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCTTGTCCGTGAATTTCATGGTATGAGCAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTGGAAGACAACTGTACATCAATAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGTGAGAAGCTCAGGATTCTACCATGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGACGCAAGAACTGGCTTAACTGATCCACCACCTTCAGAATCCACACCTTTACTCTCATCAAGCCCAGCATCTATGGCGTCCTCTGTCTTATCTTCTGTGAGGTCATCATTAGCTTCATCTTCAGCAATACAAATTGCCCGTACCCCATCTGTTTCTCGCAACCACTCTATGGCTAGTACCCCTTGTATTCCGCCCTCTCTCAGGTCCTACCGTCAATCCCCCTCCCTAAGCATCAGCCGAAGCTCTGTAGATCTAAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACGTTCCATGGGTTACCCATCTCTGTCATCTCTTAACTCAAGGTACTTGTCCCCACACATTCCAAGTCCAAGCACTGCTTCAGTAAGTTTTATTGGTTCATCCAGTCAACAACAGCATCCTCTTCGATATAGCGAGTCAGCTGCAAGCTTCTCGCCATTTGCCTCTGCACACTCCCTTCCGGAATGTTGA 1323 0.4414 MGNSNLPLLFFFSLVALSVMASAKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTELTNNVEHLPNVSSTFALVVRGGCSFEEKVRRAQKAGFKAVIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGLTDVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSITCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTPSVSRNHSMASTPCIPPSLRSYRQSPSLSISRSSVDLRNASQRSLASHLNSPRSMGYPSLSSLNSRYLSPHIPSPSTASVSFIGSSSQQQHPLRYSESAASFSPFASAHSLPEC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2035 440 SUPERFAMILY RING/U-box 228 288 - -
Apr8g2035 440 MobiDBLite consensus disorder prediction 328 351 - -
Apr8g2035 440 CDD PA_C_RZF_like 14 164 IPR044744 -
Apr8g2035 440 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Apr8g2035 440 Gene3D - 19 156 - -
Apr8g2035 440 SMART ring_2 235 276 IPR001841 -
Apr8g2035 440 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 8 376 - -
Apr8g2035 440 Pfam Ring finger domain 234 277 IPR001841 -
Apr8g2035 440 SUPERFAMILY PA domain 77 146 IPR046450 -
Apr8g2035 440 Pfam PA domain 73 143 IPR003137 -
Apr8g2035 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 282 IPR013083 -
Apr8g2035 440 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Apr8g2035 440 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 8 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2035 Apr-Chr8 30984862 30989977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2035 19 439 C3H Transcription Factor Family AT1G22670 48.235 1.11e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2035 K15692 - gmx:100791248 684.485