Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2027 ATGACACTAACCCAAATTCCTGAGAGATCATCAATAGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACTGAAGAGGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTGTCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATTGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGCACAAGAACTAACAGGGCCACTGCTGCTGGGTTCTGGAAAGCAACAGGAAGGGACAAGGCTGTGATGTCCAAAAACAGAATAATAGGAATGAGGAAGACCCTCGTGTTCTACAAAGGACGTGCTCCAAATGGAAGGAAAACAGATTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCAAGTCCAAGTCACAGGCAAGGTTTTGAACCATGGTGTAGTAGCAGTCAACCACACTATTTCAGAGATCAAAGCTACACAAGGCCCTTATCAATTGCAGACATTTTAAATGACACAAATGTGCTTCATTCTGCTGAAGATACAAGTTTTAGTCACTCCTTCAGTTCGGATCAGCAACAGTTAATTCTATCAAACCAAGCTGTTTTGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATTAAAGAATGTAACCAACAACACCATAATAATGGCCTAACAAATGAAGAGTATTGCAGTGATGAAAGGAGCAATAACTGTGCACAACAAGGTATTGATTGGAAGAGCTTGGACAACTTGTTTGGGTCACAATTGACCGATACATCTTTTTTTTCACATCCAAACTTGCCCATGATGATACCTCATAACCATGAGCTACAAGCTCAGAATCAAGCTAGTCACATCCTAGGATGCTTTCCTGATTCATAA 1011 0.4085 MTLTQIPERSSIDMESCVPPGFRFHPTEEELVGYYLKRKINCLKIDLDVIVEIDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFEPWCSSSQPHYFRDQSYTRPLSIADILNDTNVLHSAEDTSFSHSFSSDQQQLILSNQAVLDKQLIELPQLDSPTASLAIKECNQQHHNNGLTNEEYCSDERSNNCAQQGIDWKSLDNLFGSQLTDTSFFSHPNLPMMIPHNHELQAQNQASHILGCFPDS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2027 336 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Apr8g2027 336 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Apr8g2027 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 16 313 - -
Apr8g2027 336 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 313 - -
Apr8g2027 336 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Apr8g2027 336 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2027 Apr-Chr8 30906106 30910094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2027 14 336 NAC Transcription Factor Family AT1G71930 54.360 1.87e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr8g2027 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2027 - - var:108325420 576.63