Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2020 ATGGGTTCCTACTCTACAAGTGATGTTGCAGTGAAAATGTCTCCCAATGAAGAGGGAGAGGATGAGGCATGCCTTCATGCTTTGTTACTCTGCATTATTCAAGTGTTACCTTCGGCACTGAATGCTGCTGTTGAGCTGAAACTGTTTGACATAATAGCAAAGGGAACCCCAAATGGTGAAACCATGTCAGCATCACAAATTGCTTCTATGTTGCCAAACCAACACACAGACTTGCCTAATAGGATTGAACGCATGCTGCGTTTACTTGCAAGCTATTCTCTTCTCACTTCTTTCACTCACACCGATGAAGATGGTAGCATTCAGAGATCTTATGGACTCTCACCTGTTGGAAAGTACTTCGTCAATGATGAAAGTAAGGGATGTGCGGCTACAGTCACATCATTTCTCAACTATCCCACACTGTCCCAAGTTTGGCCCAATTTGAAGGATGTAATTATTGCTACTGAGAAGGACCTAGTCAAGAAGGTTCATGGAATGTCCTTGTACCAATGCACTGAAAAGGATCCAAAATTGAATTACATTTTCAACAAATCAATGGCTAATATCAGCATCATAGAGATGAATAGGGTCCTCGAAGTGTATAAGGGATTTGAAGGAGTTTCAACCCTGGTTGATGTGGGAGGGGGTACAGGCCAAAATCTACAGATGATAATCTCCAAGTACCCTACGATTAAGGGTATCAATTTTGATCTGCCCCAAGTTGTTGAAAAAGCACCAGCTTATACAGGGATACAACATGTTGGAGGAGATATGTTCAATTACGTGCCACAGGGTGATGCCATAGTCATGAAGTCTGTATTGCACAATTGGTCAGATGAAGAATGCGTAAGCATTTTGAGGAACTGTCACAATGCACTGCCACAAGATGGAAAGGTGATTGTGATGGAGTTCATAACACCAGAAGCATCAGAGTCGAATGCAGCAAAGTTTGTTTCCACCCTTGACCACGTCATGTATATAACAAATGGTGGAATGGAGAGAACTGAAAAGGGGTACGAGTCTTTGTGCAAGCTCTCTGGATTTTCAAGATTCCAAGTTGCCTGTCGTGCATTCTCTGCCTTGGGAATCATCGAATTTTACAAATAA 1107 0.4228 MGSYSTSDVAVKMSPNEEGEDEACLHALLLCIIQVLPSALNAAVELKLFDIIAKGTPNGETMSASQIASMLPNQHTDLPNRIERMLRLLASYSLLTSFTHTDEDGSIQRSYGLSPVGKYFVNDESKGCAATVTSFLNYPTLSQVWPNLKDVIIATEKDLVKKVHGMSLYQCTEKDPKLNYIFNKSMANISIIEMNRVLEVYKGFEGVSTLVDVGGGTGQNLQMIISKYPTIKGINFDLPQVVEKAPAYTGIQHVGGDMFNYVPQGDAIVMKSVLHNWSDEECVSILRNCHNALPQDGKVIVMEFITPEASESNAAKFVSTLDHVMYITNGGMERTEKGYESLCKLSGFSRFQVACRAFSALGIIEFYK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2020 368 PANTHER O-METHYLTRANSFERASE 5 368 IPR016461 GO:0008168
Apr8g2020 368 Gene3D Vaccinia Virus protein VP39 121 368 IPR029063 -
Apr8g2020 368 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 368 IPR016461 GO:0008168
Apr8g2020 368 Pfam O-methyltransferase domain 145 349 IPR001077 GO:0008171
Apr8g2020 368 SUPERFAMILY "Winged helix" DNA-binding domain 20 124 IPR036390 -
Apr8g2020 368 CDD AdoMet_MTases 209 302 - -
Apr8g2020 368 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 5 368 - -
Apr8g2020 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 365 IPR029063 -
Apr8g2020 368 PIRSF O-mtase 5 368 IPR016461 GO:0008168
Apr8g2020 368 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Apr8g2020 368 Gene3D - 4 120 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2020 Apr-Chr8 30848665 30850134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2020 7 368 Monolignol Biosynthesis Gene Families AT5G54160 46.429 1.76e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2020 - - gmx:100798347 457.988