Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2013 ATGGATCCACCAAAAGGAAGTTTATGTGCTAACAACTGGGCAAGGTCCTCTACCTTAACCTCACCTGGGAATGGATTACAAAATAATTTGTCCTCAGATCCGTCCTCTTTCTACGGGGTCAGGATTGAATCACCTTTCAAAGAATTCAACCAACCTTCTCCTACCCAGTCTGCACTTCCTGGTGAATCTAACAAAGATATTGAGATCCCTGATCAAGAAAATTGTCCACTGAATGACTCATCAGACACCAGTAAAGTTCAAGATTGGGATCCCAGTTCAATGTTGAATAATCTTTCCTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTGGTGCATTTGATTGTTAATAAAAAGTGCCAACCTTTTGGACAACCTCACGAACTAGTGACTCAGGAACAGCAGCTCATCACAGCTGACCTTACATCAATTATTGTTCAGTTGATCTCTACTGCAGGAAGTCTTCTCCCCTCTGTTCGGCACACTCTCACAAACACAAATCCCGTGGTTGGACAGCTTGGCCAGCTTCGTGGGATTAACCTCCCTTTTGGATCAGACCCAAGTAGTGGTATTAGGCCTCAAAATAATAGTGGAAATAAACTGTTTGATCAGTCCACTCACAATGATCCACCAAATAATTGTGAAATGGAGCAAAACTACAATATGGAAGAACATGAGCCAAAAGATGAAGAAGATGTGGATGAGGGCGAGAACCTTCCACCTGGTTCCTACGAGATTCTACAATTGGAGAAAGAAGAAATTCTTGCACCTCACACACATTTTTGTACAATATGTGGGAAGGGATTCAAGAGGGATGCAAATCTCCGAATGCATATGAGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCTCTTGCAAAGCCACACAAAGAAACCGGGTCTGAACCAAAGCTTATCAAGAGGTATTCCTGCCCTTATGCTGGCTGTAAGCGTAACAAGGATCACAAAAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTATAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCGGTCATGGCAGATCTTAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGAAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGCCATACTCCAGCTATTCCTTTGGATGACACCAAAGGAGTGGCTGAGCCACGTGATCTCCAGAGCAGAGAAAACAGCAGTATGGTAGGAAGTATGAACTTCTGCTTTGGATCAAATCCTTCAAGTGAAAATGTAGTTCAAAACATAATGGATGCGAAGGGTAATATTGATGATCCTATCAATTATTTCTCATCCTTGAACTTCGAAGGCTGTAACTTTGGTGGTTTTAATGATTTCTCTCAACCTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCCGGATCCTTTAATTGTGCTCCTAAATCTGGTGGCGGTGAATCAAGTTCTGACAATCTGTAG 1539 0.4172 MDPPKGSLCANNWARSSTLTSPGNGLQNNLSSDPSSFYGVRIESPFKEFNQPSPTQSALPGESNKDIEIPDQENCPLNDSSDTSKVQDWDPSSMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQPHELVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTNTNPVVGQLGQLRGINLPFGSDPSSGIRPQNNSGNKLFDQSTHNDPPNNCEMEQNYNMEEHEPKDEEDVDEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGVAEPRDLQSRENSSMVGSMNFCFGSNPSSENVVQNIMDAKGNIDDPINYFSSLNFEGCNFGGFNDFSQPPFEDSEGSFSFLMSGSFNCAPKSGGGESSSDNL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2013 512 MobiDBLite consensus disorder prediction 1 89 - -
Apr8g2013 512 MobiDBLite consensus disorder prediction 74 89 - -
Apr8g2013 512 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Apr8g2013 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 495 - -
Apr8g2013 512 MobiDBLite consensus disorder prediction 186 217 - -
Apr8g2013 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 495 IPR044300 GO:0010044|GO:0010447
Apr8g2013 512 SUPERFAMILY beta-beta-alpha zinc fingers 258 285 IPR036236 -
Apr8g2013 512 SMART c2h2final6 347 369 IPR013087 -
Apr8g2013 512 SMART c2h2final6 260 282 IPR013087 -
Apr8g2013 512 SMART c2h2final6 309 342 IPR013087 -
Apr8g2013 512 MobiDBLite consensus disorder prediction 48 62 - -
Apr8g2013 512 Gene3D Classic Zinc Finger 244 314 - -
Apr8g2013 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Apr8g2013 512 MobiDBLite consensus disorder prediction 10 38 - -
Apr8g2013 512 MobiDBLite consensus disorder prediction 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2013 Apr-Chr8 30791216 30793928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2013 228 510 C2H2 Transcription Factor Family AT1G34370 69.310 4.07e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g2013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2013 - - gmx:100170687 948.347