Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2011 ATGGAAGATTCAGAGGAAGATGGATTTTTGAATCTTAGCCTTTCAGTTGCTGCTGATAGGGAAAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACATAATGTTTCTATGAGTAGTACTACTACTAGAAACTCCTATGAAGGCTACGAGGGGAAGATCTTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCACAGGAGGAAAGGTGTTGTAGAAGATGGAAATGGCCTTCCTTTGATCCATTTGCTTCTCTCGACTGCCACTGCAGTTGATGAGAACAACTTGGATTCATCCTTAGAGAATCTCACCGATTTATACCAAACTGTTTCCCTAACAGGTGACTCAGTTCAGCGTGTGGTGGCCTATTTTGTTGATGGTTTGGCTGCAAGGCTTCTCACAAGGAAATCTCCATTCTATGACATGCTCATGGAGGAACCAACAACTGAGGAAGAGTTTCTTGCGTTCACAGATCTCTACAGAGTTTCACCTTACTACCAATTTGCTCATTTCACAGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAGGAGGAAGAGAGGAACAACAAAGCACTACATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTTATTCAGTCTCTTTCTGAGAAAGCCACAAGTGGCAACCGCATATCCCTCAGGATTACTGGATTTGGTAAAAACCTTAAAGAACTACAAGAAACTGAGTCTAGATTGGTTAGCTTCTCAAAGGGTTTTGGAAATCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGTTCAAGGGTTGTCAACCTAAGGAAGAAAAAGAATGAAACTGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAACCCCTCCATTGTTGTGTTGGTTGAGCAAGAAGGTAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCTTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGCCTCCCACTTGAGAGTACTGAGAGGTTGAGAATTGAGAAGAAGCTTTTGGGTAAAGAGATCAAAAGTATGCTAAACTATGATGATGTGGATGGTGAGGATTGCCCGAAGTATGAAAGAATGGAAACATGGAAAGCAAGGATGGAGAATCATAGGTTTGTTGCCACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGCTTCTGAAGATGAGGACCCATTATTGTCCACTCCAGTTTGAGGAAGAGGGAGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTTTGCTTACCGTCTCAGCTTGGCAATCAGTCTGA 1395 0.4251 MEDSEEDGFLNLSLSVAADRERERKKKGKIIREHNVSMSSTTTRNSYEGYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDENNLDSSLENLTDLYQTVSLTGDSVQRVVAYFVDGLAARLLTRKSPFYDMLMEEPTTEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGKNLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRVVNLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVLVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDDVDGEDCPKYERMETWKARMENHRFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2011 464 PANTHER OSJNBA0084A10.13 PROTEIN 14 462 - -
Apr8g2011 464 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 462 IPR005202 -
Apr8g2011 464 Pfam GRAS domain family 83 462 IPR005202 -
Apr8g2011 464 ProSiteProfiles GRAS family profile. 74 462 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2011 Apr-Chr8 30779115 30780509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2011 91 461 GRAS Transcription Factor Family AT3G54220 34.737 1.42e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr8g2011 GRAS 3.8e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2011 - - gmx:100809458 836.254