Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2008 ATGTCTGGCAACTCAAATTGCACTGTTTATATAGGCAATCTGGATGAGAGGGTGACAGACAGGGTCTTGTATGATATATTAATTCAAGCAGGACGAGTGGTAGACTTGTACATTCCTAAAGATAAGGAATCGGAGAAACCCAAAGGTTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCAGGCTCTTCTCTGGCCTCGTGACACTATACAACAGAACACTTAAGTTTGCGTCTGCCAATAAACAGATATCTGGGAAAGAAAAAACTACCCCTAACGGTTCTACAGCAATTACACCTGCATCAAATACTTCTCAACGACCAAGGCCTTATCCAGTGCCAATAAATAATTCAGAAAATTTTCAGCACCCTGCTAAGTTATCAACTCCTGATCGATTTTCAGATTATGCTGTAAATCATTCCCAAGTACAACTAATGAATGAAACAACACGGAAACCGAACATCTTGCAGTGGTATAAGATGATGAAATACGATATTTTAAGTTTGTTTTGA 525 0.3905 MSGNSNCTVYIGNLDERVTDRVLYDILIQAGRVVDLYIPKDKESEKPKGFAFAEYETEEIADYAVRLFSGLVTLYNRTLKFASANKQISGKEKTTPNGSTAITPASNTSQRPRPYPVPINNSENFQHPAKLSTPDRFSDYAVNHSQVQLMNETTRKPNILQWYKMMKYDILSLF* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2008 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Apr8g2008 174 Gene3D - 2 94 IPR012677 -
Apr8g2008 174 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 158 - -
Apr8g2008 174 PANTHER OS01G0876500 PROTEIN 1 158 - -
Apr8g2008 174 SMART rrm1_1 8 82 IPR000504 GO:0003723
Apr8g2008 174 MobiDBLite consensus disorder prediction 88 113 - -
Apr8g2008 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Apr8g2008 174 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2008 8 65 Eukaryotic Initiation Factors Gene Family AT1G49760 32.759 2.21e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2008 K12831 - gmx:100803118 260.381