Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g2001 ATGGAATACAAAGTGAAAACCACAACATCTTCTCCACCAATCCCAATCCATGTTCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCCCCTCCTTCACATTCTCCAACACCTTTCCCTTCACCCTCTCAGGGTTCTCCTTCTGCTGCTCCACCCTCCCCTCCTCCTCCACCACCACCAGTGGTGGTTAGCCCTTGTGCTGCTTGCAAGATCCTTCGCCGCAGGTGTGTGGAAAAGTGTGTCTTGGCTCCTTATTTTCCTCCCACTGATCCACTCAAGTTCACCATTGCCCATAGAGTCTTTGGTGCAAGCAACATCATCAAATTTTTGCAGGAATTGCCAGAATCTCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAAGCAAATGCTAGGATCAGAGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAGAAGCAAGTTAGCGAGCTACAAGCACAGCTGGCTAAAGCACAGGCTGAGCTAGTCAACATGCAGTGCCAACAAGCTAATTTAGTGGCACTAATTTGCATGGAAATGAGTCAATCACAGGATCAGCACATGCCTCAGCCTCAACCTCACGTTGATATGAGCTGCTTCTTAGAGGACAACAGTTTTGGCTCGGCTTGGGAGCCACTTTGGACATGA 663 0.4827 MEYKVKTTTSSPPIPIHVPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPSAAPPSPPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQDQHMPQPQPHVDMSCFLEDNSFGSAWEPLWT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g2001 220 ProSiteProfiles LOB domain profile. 66 167 IPR004883 -
Apr8g2001 220 MobiDBLite consensus disorder prediction 1 30 - -
Apr8g2001 220 Coils Coil 146 173 - -
Apr8g2001 220 MobiDBLite consensus disorder prediction 1 59 - -
Apr8g2001 220 Pfam Lateral organ boundaries (LOB) domain 67 164 IPR004883 -
Apr8g2001 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 53 208 - -
Apr8g2001 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 53 208 - -
Apr8g2001 220 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g2001 Apr-Chr8 30675550 30676769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g2001 63 220 AS2 family AT1G07900 71.605 5.81e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr8g2001 LOB 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g2001 - - gmx:100806667 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g2001 8 30675550 30676769 Apr8g2001 8 30675550 30676769 ECH