Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1996 ATGGTGTATAATCTTTCTTGCTTTGAGATTTTAGTCATAATGGGTAAAGAGAAGATTCACATTAACATTGTGGTCATTGGCCACGTCGACTCTGGGAAGTCAACTACCACCGGCCACTTGATCTACAAGCTCGGAGGTATTGACAAGCGTGTCATTGAGAGATTTGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACTATTGATATTGCCCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTGATTGATGCTCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCTCAAGCTGACTGTGCTGTTCTTATCATTGACTCCACTACTGGTGGTTTTGAAGCTGGAATTTCCAAGGATGGACAGACTCGTGAACATGCTCTTCTTGCTTTCACTCTTGGTGTTAGGCAGATGATTTGCTGCTGTAACAAGATTGATGCTACCACTCCTAAGTACTCCAAAGCTAGATATGATGAAATTGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTTGGATATAACCCTGACAAGATACCTTTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAGATCAATGAGCCCAAGAGGCCATCAGACAAGCCTCTCCGATTACCCCTTCAGGATGTCTACAAGATCGGAGGAATTGGAACAGTGCCTGTAGGGCGAGTTGAAACCGGTATCTTGAAACCTGGAATGGTCGTTACTTTTGCACCATCTGGACTGACAACTGAAGTCAAGTCTGTGGAGATGCACCATGAAGCTCTTCAAGAGGCCCTTCCTGGTGACAATGTGGGATTCAACGTCAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTATGTAGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCTAACTTCACATCCCAAGTTATCATCATGAATCACCCTGGGCAGATTGGAAGTGGCTATGCACCAGTACTTGATTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAATTGATGACTAAGATTGACAGGCGATCTGGCAAAGAGCTTGAGAAGGAGCCCAAGTTCCTGAAGAATGGAGATGCCGGTTTTGTGAAGATGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCTCTTGGTCGTTTTGCTGTGAGAGACATGCGTCAAACTGTGGCCGTGGGAGTCATCAAGTCGGTGGAGAAGAAGGATCCAACTGGAGCTAAGATCACCAAGGCTGCACAGAAGAAGGGCAAGTGA 1386 0.4618 MVYNLSCFEILVIMGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKIDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGSGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKITKAAQKKGK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1996 461 CDD EF1_alpha 22 240 - -
Apr8g1996 461 Pfam Elongation factor Tu domain 2 261 326 IPR004161 GO:0005525
Apr8g1996 461 PANTHER TRANSLATION FACTOR 14 459 - -
Apr8g1996 461 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 339 442 IPR009001 -
Apr8g1996 461 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 18 243 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 Gene3D Translation factors 242 329 - -
Apr8g1996 461 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 14 459 - -
Apr8g1996 461 Hamap Elongation factor Tu [tuf]. 15 445 IPR004539 GO:0003746|GO:0005525|GO:0006414
Apr8g1996 461 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 14 446 IPR004539 GO:0003746|GO:0005525|GO:0006414
Apr8g1996 461 Pfam Elongation factor Tu GTP binding domain 20 235 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 CDD EF1_alpha_III 336 439 - -
Apr8g1996 461 Pfam Elongation factor Tu C-terminal domain 335 442 IPR004160 -
Apr8g1996 461 PRINTS GTP-binding elongation factor signature 22 35 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 PRINTS GTP-binding elongation factor signature 81 89 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 PRINTS GTP-binding elongation factor signature 161 170 IPR000795 GO:0003924|GO:0005525
Apr8g1996 461 Gene3D Translation factors 336 443 - -
Apr8g1996 461 CDD EF1_alpha_II 243 333 - -
Apr8g1996 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 262 IPR027417 -
Apr8g1996 461 SUPERFAMILY Translation proteins 239 334 IPR009000 -
Apr8g1996 461 Gene3D - 5 241 IPR027417 -
Apr8g1996 461 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 74 89 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1996 Apr-Chr8 30628032 30630428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1996 14 453 Eukaryotic Initiation Factors Gene Family AT5G60390 95.682 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1996 K03231 - thj:104810843 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1996 8 30628032 30630428 Apr8g1996 8 30628032 30630428 ECH