Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1973 ATGTTCATGGTTATGGATTCCACTGAGAGGGGTTCAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCACAGGGCCACGCAGAACACGCTCATGGGAAAGTGGATTTTGGCCAAACACGTGTTCCACCACTCATCCCTTGTAGACTCTCTGCTATGAGATACATGGCAGACCCTGACACAGATGAGGTGTATGTGAAAATGAGGTTGACCCCTTTGAGAGAACAAGAATTGGACAGGGAAGATGATTGTTTCTTTGGAAACAATGGAGTGGAGGGTCAAGAGAAACCACCCACCTCTTTTGCCAAGACACTGACACAATCTGATGCCAACAACGGTGGAGGATTCTCTGTGCCTCGTTACTGTGCGGAAACAATCTTCCCAAGGTTGGATTATTCAGCTGAACCTCCAGTTCAGACCATCATTGCAAAGGACATGCATGGACAATGTTGGAAATTCAGGCATATCTATAGAGGGACACCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAAAAGAAGCTTGTTGCTGGTGATTCTATTGTGTTTCTGAGGGCAGAAAATGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGTGGAACTGAGTTTTCTTCTGGTTGGAATCCTCTCTTTGGTGGGGGTTCTGGTTTCTTGTGTGGTGAGAGCAACTTGGTGAGTGGTAGAAAAGGTGGTGATGAGATGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTGTGACTAGTGCTGTTAATGGTAGGCCCTTTGAGGTTGTGTACTATCCAAGGGCTAGTACTCCAGAGTTTTGTGTTAAGTCTTCTGCTGTGAAGACTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTCGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATATCTTCTGTTCAAGTTTCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGCCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAAACATGCCTACTTTCAATATCTCTCCATTTTCACCTCCGAGAAAGAAACAACGGTTTCTACAAGACCCATATTTTCAAGTCATCAATCAACTTCCAGTGTCATCATTCTCTAGCAATCTTCTCAATTATACAAACCCTCTATGTAACATTCAAGATAATAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGACTAACTCCATCTGATTTTCCCTTCAACAAGCTTCAACCAGACATGCTTCTAGGTGGGTTCTCAAGGCTTGACCATGCAGCACAACCTATTAGGCCTCCTTGTAGAACCTACATGAGCAACACAACTAAGACCAATGTTGATATAACTTGCTTGTTGACTGTGGGAAGTCCTGGCCAAAGTTTTAAGGAATCCAATGAAGTAGCGAAAGCACCCCACATTTTGTTATTTGGAAAACTCATCCACACTGAGCAAAAGAGTTCAAACACTTGCTCTGCTACCACAACTGGCAATAGTGCATCTGAAGGGAATTCACTGAAGACATCAAATGCTTCCGATGGCCTTGGTTCTGCTTTGCATCAAAGTAGTCCAATTGAGAACAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAACCGAAAATGCTAACACATTATGTATGGCTTTATAA 1812 0.4448 MFMVMDSTERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLIPCRLSAMRYMADPDTDEVYVKMRLTPLREQELDREDDCFFGNNGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGTEFSSGWNPLFGGGSGFLCGESNLVSGRKGGDEMVGRVAAESVVEAVTSAVNGRPFEVVYYPRASTPEFCVKSSAVKTAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVSDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNISPFSPPRKKQRFLQDPYFQVINQLPVSSFSSNLLNYTNPLCNIQDNNSSAGIQGARHAQIGLTPSDFPFNKLQPDMLLGGFSRLDHAAQPIRPPCRTYMSNTTKTNVDITCLLTVGSPGQSFKESNEVAKAPHILLFGKLIHTEQKSSNTCSATTTGNSASEGNSLKTSNASDGLGSALHQSSPIENNSDGGSPWYKDQHKSDLGTENANTLCMAL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1973 603 SMART B3_2 119 221 IPR003340 GO:0003677
Apr8g1973 603 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr8g1973 603 SUPERFAMILY DNA-binding pseudobarrel domain 111 220 IPR015300 -
Apr8g1973 603 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 573 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr8g1973 603 Gene3D - 310 384 - -
Apr8g1973 603 MobiDBLite consensus disorder prediction 535 590 - -
Apr8g1973 603 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Apr8g1973 603 CDD B3_DNA 118 219 IPR003340 GO:0003677
Apr8g1973 603 Gene3D - 117 221 IPR015300 -
Apr8g1973 603 PANTHER AUXIN RESPONSE FACTOR 16 9 573 - -
Apr8g1973 603 MobiDBLite consensus disorder prediction 535 582 - -
Apr8g1973 603 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1973 Apr-Chr8 30358325 30361547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1973 1 589 B3 DNA Binding Superfamily AT4G30080 56.739 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr8g1973 B3 2.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1973 - - gmx:100803053 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0195 4 1593587 1597982 Apr8g1973 8 30358325 30361547 ECH
Apr8g0487 8 4196663 4200727 Apr8g1973 8 30358325 30361547 ECH
Apr8g1973 8 30358325 30361547 Apr8g1973 8 30358325 30361547 ECH