Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1972 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTTGACCACATCGACGACCTCCTCGACTTCCCCGTCGAGGACGTCGACGGAGCAGCCGCCGCCACCACCTTGCCATCCGTCGCAGCCGCCGGGAACTGCAACTCGCTGGCGAGCATCTGGCCTGCCGAGTCCGACTCTTTCCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGCTTCGGACCTTTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTTTCCAACTTTGTGGAGGATTCCTTCTGTGGGGGGAGCCTTACAATGAAGAAAGTGGAGGAGCCATCATCATGCACCACCAAGGAGGACTCATCATCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCCGGCGGGAAGACAGCGCCGCGCAGCCCGGAGATTTACATCCCGGTGCCATGTGGGCGTGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAACCCTCGCCCTGCCATGCAGCTCATTTCCCCTGCCTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTGATCTCCACCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCCCAACCTGTAACCAAGGTAGCAAAGCAAGCTTCTGGGGAGCCTAAGAAGAAAAAGAAAGTGAAGCTACCACTTCCAGTAGGTCCAGCTGATATCATCAATCAGAATGCTAATTCACAACCGGTTAGGAAATGTATGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGCGGTGTTCGCTACAAGTCAGGCCGGCTCTTCCCTGAATACAGGCCTGCTGCAAGTCCAACCTTTTGCGCATCCTTGCACTCCAATTCCCATAAGAAGGTCCTTGAAATGAGATGCAGGGGTATTGACAAATCTGGTTTTGCAACCCATTCAGCTGCCTCACCCGAACTCATTCCAAATACTAACAGCAGCCTCACCCTGGAGTACATGTGA 1065 0.538 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGAAAATTLPSVAAAGNCNSLASIWPAESDSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVEEPSSCTTKEDSSSVHNQFHTSSPVSVLESSSSCSGGKTAPRSPEIYIPVPCGRARSKRPRPATFNPRPAMQLISPASSFVGENMQPNVISTKASSDSENFAESQPVTKVAKQASGEPKKKKKVKLPLPVGPADIINQNANSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCASLHSNSHKKVLEMRCRGIDKSGFATHSAASPELIPNTNSSLTLEYM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1972 354 PANTHER GATA TRANSCRIPTION FACTOR 1 354 - -
Apr8g1972 354 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Apr8g1972 354 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Apr8g1972 354 MobiDBLite consensus disorder prediction 205 223 - -
Apr8g1972 354 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Apr8g1972 354 MobiDBLite consensus disorder prediction 117 181 - -
Apr8g1972 354 Gene3D - 255 304 IPR013088 GO:0006355|GO:0008270
Apr8g1972 354 MobiDBLite consensus disorder prediction 205 237 - -
Apr8g1972 354 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Apr8g1972 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 317 - -
Apr8g1972 354 PANTHER GATA TRANSCRIPTION FACTOR 8 1 354 - -
Apr8g1972 354 PIRSF Txn_fac_GATA_plant 3 348 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr8g1972 354 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Apr8g1972 354 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1972 Apr-Chr8 30341667 30345096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1972 19 322 C2C2-Gata Transcription Factor Family AT4G32890 36.218 1.19e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr8g1972 GATA 6.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1972 - - gmx:100816641 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1972 8 30341667 30345096 Apr8g1972 8 30341667 30345096 ECH