Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1967 ATGGGAAGCAAGTGGAAGAAAGCTAAGGTAGCGTTGGGTCTGAATCTGTGCATGTTCGTTCCCAGAACCTTAGATGATGAATCGCCGCCGGAGACCTTGGTTTCCGAGAGGCTTTCCGACGCTGCTCTGCTCTCGCCGGCTAACTGGGAAATGAGTTCTTCCCGGCCAACCACGCCGGTGTCGTCTTTTCACGGTTTGAAGCTGTCCAAAAGTAGCAGCAAATCGTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCTGGGCATGCTATATTCACTGCTGAGTGTTCACACTCTTTCCATTTCCACTGCATAGCTTCAAATGTAAAACATGGAAACCAAATATGTCCAGTGTGCAGAGCAAAGTGGAAGGAAATACCCTTATCGGGTCCCAGTTTGGAACCTATCACAGGCAGAGTCGCACCAAGTCCAATAAATTGGCCCCAAAATGATGCTTTGATGGCTGTGGTCCACCGCCTACCTCTACCTCATCCTTGCCGAGATTTGAATAGGAGGTGTGTTTTGCCAATTTATCAGGCTTCTGAGCCTGGCATATTTGATGATGATGAATCCTTAAATCATCAACCTGCAATTTCTGAGAAAAGCCCTTGCAATAAGAATGGTGAAGATACTAATGCTGCTAGAGCATTGGAGATTAAAACGTATCCAGAAGTGGCTGTTGCTCCAGGACCCAAGACTTATTCAAACTTCACGATTTTGGTTCATCTCAAAGCTACTGCTGCTGCAGCAACTGATGCAGCCAAAAGACAAAACATTAGCAGAAACCAGGCTAGCTTGTCACAGATTTCTCAGACTCCACGTGCCCCTGTTGACTTGGTCACAGTGCTTGATGTTAGTGGTAGCATGGCTGGAACTAAGCTTGCACTACTAAAAAGAGCAATGGGATTTGTTATACAGAACCTAGGCTCTAATGACCGGCTCTCTGTTATTGCTTTCTCTTCCACAGCACGCCGGCTCTTTCCCTTGTGCAGAATGACTGATTCTGGGCGGCAACAGGCGTTGCATGCTGTTAATTCTTTGGTTGCAAATGGGGGTACGAATATTGCTGAAGGGCTTAGAAAAGGTGCGAAGATAATGGAAGACCGAAAGGAAAAAAATCCAGTTGGCAGTATTATACTGTTGTCTGATGGTCAAGATAATTACACTGTCAATTTTTCAGCTAACCAGCCCCAACCAAATTACGAGTTGCTTTTGCCTACTTCTATTAGTGGTCGTGATAATTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCTTCTTCAATGCACTCGATTTCAGAGATTTCTGGTGGCACATTTTCTTTCATTGAGACTGAAGCCGTGTTGCAGGATGCATTTGCACAGTGCATTGGAGGACTTCTGAGTGTTGTTGTTCAGGAGCTGCAAGTGGGAATTGAGTGTATCCACCCAAATCTCAATCTTGTTTCACTTAAAGCAGGAAGTTACCCAACTCGTTTGATGGCTGATGTACGAAAAGGATTTATTGATGTTGGTGACTTGTATGCTGATGAAGAGAGGGATTTTCTAGTGTCAGTTAATGTGCCAGCAACATCTGGCAATGAAACATCATTGATAAAGGTCAAATGTGTGTACAAGGATCCCTTAACTCAGGAAACAGCAACGTTGGATGGTGAAGAAGTAAAGATTGAGAGGCCTGAAAGAGTTGGGGAGGTTGTAATGTCACTTGAAGTGGACAGGCAGCGCAACAGGCTCCAAGCAGCCGAGGCAATGGCCCAGGCTCGGGTCGCAGCTGAACAGGGTGACTTAACTGGAGCAGCATTGATCCTTGAAAACTGTAGAAAGATGCTGTCAGAGACTGTTTCGGCCAAATCTCATGATCGCCTTTGTGTTGCTTTGGATGCTGAGCTCAAGGAAATGCAAGAGCGGATGGCAAGTAGGCATGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCGCACTCGTGGCAAAGAGCAACAGCAAGAGGTGATTCCACTGATAGGTCAAGTCTTGTTCAGTCATATCAGACTCCATCAATGGCTGAGATGCTTACTCGATCTCAGGCCATGTTACTAGGTAGTCCATCAGGCCAGAGGCTTCTGCAGCCATTGTTGTCATTCAGATCACAACCCAGCCCAAGGTGA 2187 0.4568 MGSKWKKAKVALGLNLCMFVPRTLDDESPPETLVSERLSDAALLSPANWEMSSSRPTTPVSSFHGLKLSKSSSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLEPITGRVAPSPINWPQNDALMAVVHRLPLPHPCRDLNRRCVLPIYQASEPGIFDDDESLNHQPAISEKSPCNKNGEDTNAARALEIKTYPEVAVAPGPKTYSNFTILVHLKATAAAATDAAKRQNISRNQASLSQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALHAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVGSIILLSDGQDNYTVNFSANQPQPNYELLLPTSISGRDNSGFQIPVHAFGFGADHDASSMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIHPNLNLVSLKAGSYPTRLMADVRKGFIDVGDLYADEERDFLVSVNVPATSGNETSLIKVKCVYKDPLTQETATLDGEEVKIERPERVGEVVMSLEVDRQRNRLQAAEAMAQARVAAEQGDLTGAALILENCRKMLSETVSAKSHDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQSYQTPSMAEMLTRSQAMLLGSPSGQRLLQPLLSFRSQPSPR* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1967 728 SUPERFAMILY vWA-like 277 467 IPR036465 -
Apr8g1967 728 SMART ring_2 80 123 IPR001841 -
Apr8g1967 728 Pfam VWA / Hh protein intein-like 630 702 IPR032838 -
Apr8g1967 728 SUPERFAMILY RING/U-box 76 130 - -
Apr8g1967 728 Pfam von Willebrand factor type A domain 282 464 IPR002035 -
Apr8g1967 728 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Apr8g1967 728 CDD RING-H2 80 124 - -
Apr8g1967 728 Coils Coil 626 646 - -
Apr8g1967 728 CDD vWA_C3HC4_type 281 454 - -
Apr8g1967 728 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 706 - -
Apr8g1967 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Apr8g1967 728 ProSiteProfiles VWFA domain profile. 282 467 IPR002035 -
Apr8g1967 728 PANTHER OS10G0464500 PROTEIN 3 706 - -
Apr8g1967 728 Gene3D von Willebrand factor, type A domain 282 468 IPR036465 -
Apr8g1967 728 Pfam Ring finger domain 79 124 IPR001841 -
Apr8g1967 728 SMART VWA_4 280 466 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1967 Apr-Chr8 30295552 30300821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1967 55 131 C3H Transcription Factor Family AT2G04240 32.468 8.92e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1967 - - gmx:100813569 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1967 8 30295552 30300821 Apr8g1967 8 30295552 30300821 ECH