LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr8g1964	ATGGAAAATTGTATCAATGGCATTGCCAATGGCTCCTTCAAACTTTGCAATGGCTCCATTTCCACTGACCCGCTTAACTGGGCCATGGCTGCTGATGCTCTCAAGGGCAGCCACCTCGATGAGGTGAAGCGCATGGTGGAGGACTATCGTAACCCGCTCGTCACGTTACGTGGCAAGACCCTCACTGTCTCTCAGGTGGCCGCGGTCGCCACGCACAACACCGCCGTCACGGTGGAGCTCGCCAAGGAGACCCGCCACAGTGTCAAGGCCAGCAGTGATTGGGTGATTGATAGCATGAACAAAGGCACTGATAGCTATGGAGTCACCACGGGGTTTGGTGCAACCTCTCACAGGAGAACCAAGCAAGGGGGTGCCCTTCAAAACGAACTCATCAGATTTTTAAATGCTGGTATTTTTGGCAATGGCACGGAGTCATGTCTCACCTTACCTCACTCAGCCACTAGAGCAGCTATGCTGGTTAGAACCAACACCTTACTTCAGGGATATTCAGGCATCCGATTTGAAATCATGGAGACCATCACCAAGTTTTTGAATCATAACATAACCCCATGTCTCCCACTGCGTGGCACAATCACTGCATCAGGTGATTTGGTCCCTTTGTCATATGTGGCTGGCCTTTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGCCAAGTTCTCAATGCTAAAGAGGCCTTTCAACTTGCTGGAATTGAGAGTGGTTTCTTTGAGTTGCAACCCAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTAGGATCTGGCTTGGCTTCAATGGTTCTTTTTGAGGCAAATTTGCTTGCTGTACTATCTGAAGTGTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACTGACCATTTAACTCATAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATTTTGGATGGTAGCTCATATGTTAAGGCTGCACAAAAGTTGCACGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTCAGAACATCACCACAATGGCTTGGGCCACAGATTGAAGTTATCAGGCATGCAACAAAGATGATTGAGAGGGAGATTAACTCTGTTAATGACAACCCATTGATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGCACCCCAATAGGTGTTTCAATGGATAATACTCGTTTGGCAATTGCTTCAATTGGGAAACTCATGTTTGCTCAATTTTCTGAGCTTGTTAATGACTTTTACAACAATGGGTTGCCATCAAATCTAACAGCTAGTAGAAACCCAAGCTTGGATTATGGCTTCAAAGGGGCAGAAATTGCAATGGCATCCTACTGCTCAGAAATTCAGTACCTTGCCAATCCTGTCACCAATCATGTGCAGAGTGCAGAACAGCATAATCAAGATGTCAATTCTTTAGGCTTGATTTCCTCCAGAAAGACAGCTGAAGCAATAGAGATATTGAAACTCATGTCCTCCACCTTCTTACTTGCATTGTGCCAAGCCATTGATCTCAGACATTTGGAGGAAAACTTGAAGAGCACAGTTAAGAACACTGTAAGTCAAGTGGCCAAGAGAATTCTCACGATGGGTGTGAATGGTGAGTTGCATCCATCCAGGTTCTGTGAGAAGGACTTGCTCAAAGTTGTTGATCGTGAGTATGTGTTTGCTTACATTGATGACCCTTGCAGTGCAACCTACCCTCTAATGCAGAAGTTGAGATTGATCCTAGTTGATCATGCATTGCAAAATGGTGATAAAGAGGCAAATTCAAGTACCTCAATTTTCCAAAAGATAGGAGCTTTTGAGGAAGAGCTCAAGACCCTTTTGCCCAAAGAGGTAGAAAGTGCTAGAATCGAAGTTGAGAATGGAAATCCTGTTGTTCCTAACCGAATTAAGGAATGCAGGTCTTACCCATTATACAAGTTTGTGAGAGAAAGTTTGGGTACAACTTTGTTGACAGGTGAGAAAGTTAAGTCACCTGGTGAGGAATTTGATAAGGTATTCACTGCATTGTGTGAAGGGAAGTTTATTGACCCCATGTTGGAATGTTTAAAGGGGTGGAATGGTGCTCCTCTACCAATATGCTAG	2145	0.4443	MENCINGIANGSFKLCNGSISTDPLNWAMAADALKGSHLDEVKRMVEDYRNPLVTLRGKTLTVSQVAAVATHNTAVTVELAKETRHSVKASSDWVIDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCLTLPHSATRAAMLVRTNTLLQGYSGIRFEIMETITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSEIQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSSTFLLALCQAIDLRHLEENLKSTVKNTVSQVAKRILTMGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRLILVDHALQNGDKEANSSTSIFQKIGAFEEELKTLLPKEVESARIEVENGNPVVPNRIKECRSYPLYKFVRESLGTTLLTGEKVKSPGEEFDKVFTALCEGKFIDPMLECLKGWNGAPLPIC*	715

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr8g1964	714	PANTHER	HISTIDINE AMMONIA-LYASE	20	714	IPR001106	-
Apr8g1964	714	SUPERFAMILY	L-aspartase-like	23	714	IPR008948	GO:0003824
Apr8g1964	714	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	196	212	IPR022313	GO:0016841
Apr8g1964	714	PANTHER	PHENYLALANINE AMMONIA-LYASE 1-LIKE	20	714	-	-
Apr8g1964	714	TIGRFAM	phe_am_lyase: phenylalanine ammonia-lyase	23	704	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
Apr8g1964	714	Gene3D	-	527	648	IPR023144	-
Apr8g1964	714	Gene3D	-	16	260	IPR024083	-
Apr8g1964	714	CDD	PAL-HAL	59	524	IPR001106	-
Apr8g1964	714	Gene3D	Fumarase/aspartase (Central domain)	261	709	-	-
Apr8g1964	714	Pfam	Aromatic amino acid lyase	61	536	IPR001106	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr8g1964	Apr-Chr8	30245962	30255874	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr8g1964	23	714	Monolignol Biosynthesis Gene Families	AT3G53260	82.514	0.0	1222

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr8g1964	K10775		-	gmx:100818777	1307.35

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Apr4g0199	4	1659830	1663673	Apr8g1964	8	30245962	30255874	ECH
Apr8g0494	8	4335829	4340169	Apr8g1964	8	30245962	30255874	ECH
Apr8g1964	8	30245962	30255874	Apr8g1964	8	30245962	30255874	ECH

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