Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1964 ATGGAAAATTGTATCAATGGCATTGCCAATGGCTCCTTCAAACTTTGCAATGGCTCCATTTCCACTGACCCGCTTAACTGGGCCATGGCTGCTGATGCTCTCAAGGGCAGCCACCTCGATGAGGTGAAGCGCATGGTGGAGGACTATCGTAACCCGCTCGTCACGTTACGTGGCAAGACCCTCACTGTCTCTCAGGTGGCCGCGGTCGCCACGCACAACACCGCCGTCACGGTGGAGCTCGCCAAGGAGACCCGCCACAGTGTCAAGGCCAGCAGTGATTGGGTGATTGATAGCATGAACAAAGGCACTGATAGCTATGGAGTCACCACGGGGTTTGGTGCAACCTCTCACAGGAGAACCAAGCAAGGGGGTGCCCTTCAAAACGAACTCATCAGATTTTTAAATGCTGGTATTTTTGGCAATGGCACGGAGTCATGTCTCACCTTACCTCACTCAGCCACTAGAGCAGCTATGCTGGTTAGAACCAACACCTTACTTCAGGGATATTCAGGCATCCGATTTGAAATCATGGAGACCATCACCAAGTTTTTGAATCATAACATAACCCCATGTCTCCCACTGCGTGGCACAATCACTGCATCAGGTGATTTGGTCCCTTTGTCATATGTGGCTGGCCTTTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGCCAAGTTCTCAATGCTAAAGAGGCCTTTCAACTTGCTGGAATTGAGAGTGGTTTCTTTGAGTTGCAACCCAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTAGGATCTGGCTTGGCTTCAATGGTTCTTTTTGAGGCAAATTTGCTTGCTGTACTATCTGAAGTGTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACTGACCATTTAACTCATAAATTGAAGCACCATCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATTTTGGATGGTAGCTCATATGTTAAGGCTGCACAAAAGTTGCACGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTCAGAACATCACCACAATGGCTTGGGCCACAGATTGAAGTTATCAGGCATGCAACAAAGATGATTGAGAGGGAGATTAACTCTGTTAATGACAACCCATTGATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGCACCCCAATAGGTGTTTCAATGGATAATACTCGTTTGGCAATTGCTTCAATTGGGAAACTCATGTTTGCTCAATTTTCTGAGCTTGTTAATGACTTTTACAACAATGGGTTGCCATCAAATCTAACAGCTAGTAGAAACCCAAGCTTGGATTATGGCTTCAAAGGGGCAGAAATTGCAATGGCATCCTACTGCTCAGAAATTCAGTACCTTGCCAATCCTGTCACCAATCATGTGCAGAGTGCAGAACAGCATAATCAAGATGTCAATTCTTTAGGCTTGATTTCCTCCAGAAAGACAGCTGAAGCAATAGAGATATTGAAACTCATGTCCTCCACCTTCTTACTTGCATTGTGCCAAGCCATTGATCTCAGACATTTGGAGGAAAACTTGAAGAGCACAGTTAAGAACACTGTAAGTCAAGTGGCCAAGAGAATTCTCACGATGGGTGTGAATGGTGAGTTGCATCCATCCAGGTTCTGTGAGAAGGACTTGCTCAAAGTTGTTGATCGTGAGTATGTGTTTGCTTACATTGATGACCCTTGCAGTGCAACCTACCCTCTAATGCAGAAGTTGAGATTGATCCTAGTTGATCATGCATTGCAAAATGGTGATAAAGAGGCAAATTCAAGTACCTCAATTTTCCAAAAGATAGGAGCTTTTGAGGAAGAGCTCAAGACCCTTTTGCCCAAAGAGGTAGAAAGTGCTAGAATCGAAGTTGAGAATGGAAATCCTGTTGTTCCTAACCGAATTAAGGAATGCAGGTCTTACCCATTATACAAGTTTGTGAGAGAAAGTTTGGGTACAACTTTGTTGACAGGTGAGAAAGTTAAGTCACCTGGTGAGGAATTTGATAAGGTATTCACTGCATTGTGTGAAGGGAAGTTTATTGACCCCATGTTGGAATGTTTAAAGGGGTGGAATGGTGCTCCTCTACCAATATGCTAG 2145 0.4443 MENCINGIANGSFKLCNGSISTDPLNWAMAADALKGSHLDEVKRMVEDYRNPLVTLRGKTLTVSQVAAVATHNTAVTVELAKETRHSVKASSDWVIDSMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCLTLPHSATRAAMLVRTNTLLQGYSGIRFEIMETITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFEANLLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSEIQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIEILKLMSSTFLLALCQAIDLRHLEENLKSTVKNTVSQVAKRILTMGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRLILVDHALQNGDKEANSSTSIFQKIGAFEEELKTLLPKEVESARIEVENGNPVVPNRIKECRSYPLYKFVRESLGTTLLTGEKVKSPGEEFDKVFTALCEGKFIDPMLECLKGWNGAPLPIC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1964 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 -
Apr8g1964 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Apr8g1964 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Apr8g1964 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 20 714 - -
Apr8g1964 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Apr8g1964 714 Gene3D - 527 648 IPR023144 -
Apr8g1964 714 Gene3D - 16 260 IPR024083 -
Apr8g1964 714 CDD PAL-HAL 59 524 IPR001106 -
Apr8g1964 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Apr8g1964 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1964 Apr-Chr8 30245962 30255874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1964 23 714 Monolignol Biosynthesis Gene Families AT3G53260 82.514 0.0 1222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1964 K10775 - gmx:100818777 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0199 4 1659830 1663673 Apr8g1964 8 30245962 30255874 ECH
Apr8g0494 8 4335829 4340169 Apr8g1964 8 30245962 30255874 ECH
Apr8g1964 8 30245962 30255874 Apr8g1964 8 30245962 30255874 ECH