Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1962 ATGGGTAGTGTTGAAATCCCCAATTGGCTTAAAGGGTTGCCTCTGGCACCAGAATTTCGCCCTACAGACACTGAATTTGCCGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTTCCAACTTTGGGATTTGTAAGATTATCCCACCGTTGCCCAAACCTTCAAAAAAATATGTATTTTCTAATTTGAATAGGTCCCTCTTGAAGTGCCCTGATTTAGGTCCAGATAACAGTTCCTTAGTTGTTAGTAATTCTTTGAAAACGGGTTTTGGGGATGGTGGTGATGATAGGGTGTTGCGAGCTGTGTTTACTACAAGGCATCAAGAACTAGGGCAGAGTCCGAGTATGAAAAAACCCAAAGGGACAGTTCAGAATCCACTATCAAGTGTTCATAGGCAAGTGTGGCAGAGTGGGGAGGTTTATACTTTAGAACAGTTTGAGTCTAAATCTAAGTCTTTTGCAAGAAGTATACTTGGTTCGGTGAAGGACGTTTCTCCACTGGTTATAGAGTCTATGTTTTGGAAGGCAGCTTTGGAGAAGCCAATATACGTGGAGTACGCCAACGACGTGCCTGGGTCTGCCTTTGGAGAAACCAAAGGTCATTTTCATTGTAGTCGTAGAAGGCGAAGGAAAAGGATTTATTATAAGAGTAGGATAGACAGCTCTGATCGTAAACAAACTGAAATAGGTAGCCTTGGAGATACCCAAACTGATGTGACTAAGGGTGCTTCAGTCCAAAGTCATGCAGACGCATGCTTACAGATGACCAAATCAGCTACGACTGCGTCAACATTTTCTTCAAATGAAGGTTCACAATCTCCTAAGGAAAAGAGTTCAGAAGCCAGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCACTTACTCGTTTTATGCCGGATGATATTCCTGGTGTTACTTCACCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCTCCAAGGGTTATGGTGGTAATGTTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCCGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCAGAATGGCTTAGGGTAGCTAAGGAAGCTGCAGTACGTAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTCACTTGCTGACCATGTCTTTTATTTCAAGAGTTCCAAGAACACTGTTACCTGGTGTGCGTAGCTCTCGTCTGAAGGACCGTCAGAAAGAAGAGAGAGAGTTGTTAGTAAAACAGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTCTCTATTCTTCTTGGAAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCGGATTTGCTGCCAGATTCCAGCGAAGATTTTCAGTTTCCTGATTTAACTTCTACAACTGGAACCTCTATGACAGACATGTCAAACATTAGTTCGGCTGAAAATAGTAGTCATTATCTGGTTGACGAGATGAGTTTGTATTTGGAGAATTTGACTGATTTAGATCTTGGTGGTGATGATCTTCCTTGCCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTCGGTTTTCCATTTATGACTGTGATACAACCAACTGAGAAATTGATAATGGAAGTTCTTCCTGATGACCATCATCTAGTTCAAGTTTCCTCTCCGAACACTACTGCTTGTGTTCATAGTTCAGTCCCAAGGAATCTATCTGTTTCTGAACTTTCATCAGCTGAGTTATCAGATCAATCATTAAACGAGTGCAATAATTTCTGGAACACCTCCAGCAAATTTTTGAGGCCACGGATTTTCTGCCTGGAGCATGCTGTTCAGATAGTGGAGATGTTGCAGCGCAAAGGTGGAGCGAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAAGGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATGATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTCTGATAGATCTGGCAATCGATGGTGAAGAACATGATGAATGTGAAGACTGGACATATAAACTAGGCATTAACCTACGGTATTGTGTCCATGCAAGAAATAATTCTCCATCTAAACGAGTTCCTTGGACTCTGGGGACCCTGTTCTATGATAAATATCTTGCTTCAGATTTTTTATCTTTAAATTGGCAGTCACGAAGATCTCGCTCAAAAAGGTTAAATTGTTTAACTCAGACTAAACCCTGTGGCAGCATTCAGAGAAAGAAGGATGATCAGTTGGAGGGAAGAATAGATGGCTCCACTGCTGAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGTAGCAAGCATGGGCCTTGAATTCCAAGAGAAGTCGAAAAATGCATCAGCTCTGGTAAGCAGGGATCATTATAATTGTGCTTCTAAAAATGAGCTTGAAGCTAAGAATTTCAGGACTGATTGTGCATCGTCATGTATCGCTGCTTCTACTGCAATGTCTCCAATGCCTCCTGTAAACCCGATTGCTGAAGTTTCCTCTAGCTCAAGCTTGAATACTTCTACATTACAACTTTCAAATTACTATCCTGATCATATTTTAATGATTGAAAAAGGTGGGGCAGAGGTTGGGAATAAAACTGTGCTGGAATTAGATATAGACACAAATAATGATTTAACACCCAGTCATTCTAAGATGCATCACAATACAAGCATCTCAAAAATATGTGGCAATGAGAGCGAAGATTGTCACAAGAAGAAACATTCTAGCTCACTTACAAATGCAACAGATAGAAATATTGAATGGGTTGGAAAGACTCAAATTACAGAAGCAATTATCATTGATAGCAAGTATAATAGCTTATGTTTGGATGGTGAAGGCAATCAAGAATATCAGTCTGCCTGCAAAAGCAACAAGGAAGCTGCTTTATCTACTGCTTTGTTAAAGCAACCTAATCTTGCGTCTATGGGTGGAAGTTTTGAAAGTCCAAATAGTAATTACGTTGCCCAAAGAATCAGCAATCCTACACCCTTGAAAAAGACAACTGAGGAAGCGATTAATTGCTTGATTGAAAGGGACAAGGAACCTCTAATTGATGATAAACCAATTAGTGAACATACTCTAAATGAAGTTTGTGAAGTTCAAAAAGAGTTAAATGCTTCTGCAGACTTGCATAATCCCATAATGTTGGATGCTGAAATGCAACAAGAGACCCATGTTTCAGCAAAACAACAGTGTGGATTTACGAGAGGGGAATACACTAGAGAGTTGAATGATGAAGTGATTCCAGAGTCTGTAAAGCAGTGTCCGATCCAAAATAAGAACAAAATTAACGAGGAACCTGTTTCTAGTTATAATGTTGCAAAAGGTAAAAACAGAAGTGTGACTACATCAGAATCAGGATGTTCTGAAGTTTCAGTGGAAACCTGTCCCTCTATTCAATTTATTTCAGATAAAGAAAAGGAAATGGAAATCCATCCAATTAATAGAATTGATGAGGAGCTTTGTGCTGGTAGTGAGACATCGTTAGAGGACTCTGGTTCTGAAATTGAGAAAGAGACGTGTGTTAGCGGAAGCATAAATGGTAGCAAAGTTGATTTGTCACAAGATAGTAGGGAGCTGGAAAGGTTTGAGTTGACTATAGCAGTTCCCAGATCAAATGCTGCAAAGAAAAACAAGAGGAAAGTGGAATATCCAACAAAGAACCAATTAGATTGTGACAACTTTATTAGAAGTCCATGTGAGGGACTGAGGCCAAGAACTGGGAAGATTGCCGCCACATGCAAAAGTGGGGGGGATATTGACAAGGAAAATCAGGTAGCAAAAAGGGCACGGAGATCTTCTGAAGTTTCAGTTCCTTGCAAAAATAAAAATGATGATGTTAGAAAGCTCCACAGCTGTGACCTTGATGGTTGCCGTATGAGTTTCAAGACAAAAGCAGAGCTACAGTTGCACAGACGAAACCTTTGCCCTCATAAAGGATGTGGTAAGAAGTTCAGCTCCCATAAATATGCACTACTTCATCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCACGGACTGAGCATATACGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTTGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGAAAAACGGGGCACTATGTGAAATCTGCTTGA 4551 0.4094 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNRSLLKCPDLGPDNSSLVVSNSLKTGFGDGGDDRVLRAVFTTRHQELGQSPSMKKPKGTVQNPLSSVHRQVWQSGEVYTLEQFESKSKSFARSILGSVKDVSPLVIESMFWKAALEKPIYVEYANDVPGSAFGETKGHFHCSRRRRRKRIYYKSRIDSSDRKQTEIGSLGDTQTDVTKGASVQSHADACLQMTKSATTASTFSSNEGSQSPKEKSSEASNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRSKGYGGNVDHLAALKLLGEKTTLLSPEVIVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPEWLRVAKEAAVRRAAMNYLPMLSHQQLLHLLTMSFISRVPRTLLPGVRSSRLKDRQKEERELLVKQAFIEDMLQENKLLSILLGKEATKKAVLWNADLLPDSSEDFQFPDLTSTTGTSMTDMSNISSAENSSHYLVDEMSLYLENLTDLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLIMEVLPDDHHLVQVSSPNTTACVHSSVPRNLSVSELSSAELSDQSLNECNNFWNTSSKFLRPRIFCLEHAVQIVEMLQRKGGANVLIICHSDYQKIKAHAKAVAEEIHSAFDYDEVPLDTASPENLTLIDLAIDGEEHDECEDWTYKLGINLRYCVHARNNSPSKRVPWTLGTLFYDKYLASDFLSLNWQSRRSRSKRLNCLTQTKPCGSIQRKKDDQLEGRIDGSTAEKKLIQYSRRKFKSKQSCFSVASMGLEFQEKSKNASALVSRDHYNCASKNELEAKNFRTDCASSCIAASTAMSPMPPVNPIAEVSSSSSLNTSTLQLSNYYPDHILMIEKGGAEVGNKTVLELDIDTNNDLTPSHSKMHHNTSISKICGNESEDCHKKKHSSSLTNATDRNIEWVGKTQITEAIIIDSKYNSLCLDGEGNQEYQSACKSNKEAALSTALLKQPNLASMGGSFESPNSNYVAQRISNPTPLKKTTEEAINCLIERDKEPLIDDKPISEHTLNEVCEVQKELNASADLHNPIMLDAEMQQETHVSAKQQCGFTRGEYTRELNDEVIPESVKQCPIQNKNKINEEPVSSYNVAKGKNRSVTTSESGCSEVSVETCPSIQFISDKEKEMEIHPINRIDEELCAGSETSLEDSGSEIEKETCVSGSINGSKVDLSQDSRELERFELTIAVPRSNAAKKNKRKVEYPTKNQLDCDNFIRSPCEGLRPRTGKIAATCKSGGDIDKENQVAKRARRSSEVSVPCKNKNDDVRKLHSCDLDGCRMSFKTKAELQLHRRNLCPHKGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDFSRHRRKTGHYVKSA* 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1962 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1511 IPR013087 -
Apr8g1962 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1457 1479 IPR013087 -
Apr8g1962 1516 Gene3D Classic Zinc Finger 1425 1475 - -
Apr8g1962 1516 SMART JmjN_1 15 55 IPR003349 -
Apr8g1962 1516 SMART cupin_9 293 462 IPR003347 -
Apr8g1962 1516 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Apr8g1962 1516 Pfam jmjN domain 17 50 IPR003349 -
Apr8g1962 1516 ProSitePatterns Zinc finger C2H2 type domain signature. 1427 1449 IPR013087 -
Apr8g1962 1516 SUPERFAMILY beta-beta-alpha zinc fingers 1465 1507 IPR036236 -
Apr8g1962 1516 SMART c2h2final6 1425 1449 IPR013087 -
Apr8g1962 1516 SMART c2h2final6 1455 1479 IPR013087 -
Apr8g1962 1516 SMART c2h2final6 1402 1424 IPR013087 -
Apr8g1962 1516 SMART c2h2final6 1485 1511 IPR013087 -
Apr8g1962 1516 SUPERFAMILY beta-beta-alpha zinc fingers 1427 1462 IPR036236 -
Apr8g1962 1516 Gene3D Cupin 9 466 - -
Apr8g1962 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1516 IPR013087 -
Apr8g1962 1516 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1506 - -
Apr8g1962 1516 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1506 - -
Apr8g1962 1516 MobiDBLite consensus disorder prediction 264 293 - -
Apr8g1962 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1425 1454 IPR013087 -
Apr8g1962 1516 SUPERFAMILY Clavaminate synthase-like 294 459 - -
Apr8g1962 1516 Pfam JmjC domain, hydroxylase 326 445 IPR003347 -
Apr8g1962 1516 ProSiteProfiles Zinc finger C2H2 type domain profile. 1455 1484 IPR013087 -
Apr8g1962 1516 ProSiteProfiles JmjC domain profile. 293 462 IPR003347 -
Apr8g1962 1516 Gene3D Classic Zinc Finger 1476 1510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1962 Apr-Chr8 30215454 30228227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1962 1 939 C2H2 Transcription Factor Family AT5G04240 53.479 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1962 JmjC 1.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1962 - - gmx:100799861 2365.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1962 8 30215454 30228227 Apr8g1962 8 30215454 30228227 ECH