Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1960 ATGTGCAGGACCAAAAAGAGCACCAGCGTGGTAGAACCCAGAAACAGAAACAGAAACAGAAACACTAAGAGAAACATGCACGCGAACAACTCTCATCCTCAACCAACACGAACCTTAACATCCTCATCGTCCAATTACGAATCCTCAACCAGCGATGTCCCCATCACAGAATCAAGAAGCTATGTATACGACAACACCAAAAACAGAGACTGGTCGAAATCATCTTCCATCTCAAGCCGTGCCTCTCTTTCAAGCCTCAAAGACACTCTCCCAGAAAACCCTAATATCTACAACTTCTCTGAGATCTCTGCAGCCACCTCCAATTTGTCCACCCCACGCCTCTCCTCCTCCTCATGGCGTTGTTTCATTCGCGACCGAGACGTCGTCGTTTTCCAGCGCAAGTTTCGCCGCCAGTTTGACCTATCAGAGCTCCGCCACCGCCTCGCTCTTATCTGTCGGAGCCACCACAGCAGCCTCGTCAAACTCCTCGGAGCTTCAATTTCCGGCAACTACATTTTCCTCGTCTACGACTTCGTCCCTGGCGCTAGCCTCGTCGATTGCCTCCGAAATCGGCGGAACCCTAGCTTCACCGATCTTTCCACCTGGACTTCGAGGATGCAAATCGCATCCGATATCGCCCACGGCCTCGATTACATCCACAATTCCTCCGGTTCCGGTTTCGTTCACAACCACATCAAGAGCTCCAGCATCGTCGTCGCCGAGGACAATTTCAGCGCCAAGATCTGCCACTTCGGCACATCTGATCTCTGCGGCGAGGCCGTCGGAGAGGTTTCCGGCGCGAGGTTGGATAGGTCCGGTAGCCGGACGGTGAGGTTCGAGGGGACGAGGGGGTACATGGCGCCGGAATTTCAGGTGACCGGCGTGGCGACGCAGAAGACCGACGTGTACGCGTTCGGAGTGGTGGTTTTGGAGCTTCTGAGCGGGGATGAAGCGGTGAGGTTCGAATTCGATGACGACGGCAGTTACAAGAGGGTGAGCGTGGTGGAGACGGCGAGGGTGGCGGTGGAGGAGAACGGCGGCGCGAGGAAGTGGGTGGATAAGAGGCTGAGAGATTCGTTTCCGATGGACGTGGCAGAGAGAATGATTCGGGTCGGGTTGGAGTGTGTTGAAGATGACCCGAATAAGAGACCGGATATGGGTCGGGTCTCGATTGAGGTGTCGAAGTTGTACTTGGAATCGAAGAAGTGGGCTGAGAACATGGGAACTGATATTGACTTATCTGTCTCATTGGCCCCACGGTAA 1263 0.5424 MCRTKKSTSVVEPRNRNRNRNTKRNMHANNSHPQPTRTLTSSSSNYESSTSDVPITESRSYVYDNTKNRDWSKSSSISSRASLSSLKDTLPENPNIYNFSEISAATSNLSTPRLSSSSWRCFIRDRDVVVFQRKFRRQFDLSELRHRLALICRSHHSSLVKLLGASISGNYIFLVYDFVPGASLVDCLRNRRNPSFTDLSTWTSRMQIASDIAHGLDYIHNSSGSGFVHNHIKSSSIVVAEDNFSAKICHFGTSDLCGEAVGEVSGARLDRSGSRTVRFEGTRGYMAPEFQVTGVATQKTDVYAFGVVVLELLSGDEAVRFEFDDDGSYKRVSVVETARVAVEENGGARKWVDKRLRDSFPMDVAERMIRVGLECVEDDPNKRPDMGRVSIEVSKLYLESKKWAENMGTDIDLSVSLAPR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1960 420 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Apr8g1960 420 ProSiteProfiles Protein kinase domain profile. 108 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1960 420 SUPERFAMILY Protein kinase-like (PK-like) 129 391 IPR011009 -
Apr8g1960 420 MobiDBLite consensus disorder prediction 26 53 - -
Apr8g1960 420 Pfam Protein tyrosine and serine/threonine kinase 140 389 IPR001245 GO:0004672|GO:0006468
Apr8g1960 420 Gene3D Transferase(Phosphotransferase) domain 1 180 415 - -
Apr8g1960 420 MobiDBLite consensus disorder prediction 1 53 - -
Apr8g1960 420 PANTHER OS09G0572100 PROTEIN 1 420 - -
Apr8g1960 420 PANTHER OS09G0572100 PROTEIN 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1960 Apr-Chr8 30204752 30206382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1960 92 408 Receptor kinase-like Gene Family AT1G51940 33.033 1.14e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Apr8g1960 PK_Tyr_Ser-Thr 6.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1960 - - gmx:100820374 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1960 8 30204752 30206382 Apr8g1960 8 30204752 30206382 ECH