Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1956 ATGGCAACACACGACATGGATCCTGATGTTGTTCGCTGGGGTCTTCATCTCCTAGATGTTTGCACCCTTTCCCATCACCGTTCGCCAAGTATCGTAACTCGATATGATCCTGATTTAAGTCGAGTTGAATATGTTAGAGAAGGCTTTTGTCAGGATGTGTATGTGGAAAATGACGAGGCTGTTGCACGTGCTTATCAAGAAGAATTATCTCAACTTGATTCCATGGGAGCTTCTGGAATATCAGATTTTGAGAATGAGCGATTGCGATATGCACAAGATTGGCCTTCTTCTTCAAATGGAAACTATAACTTTGACAACGAGTCTTGCCGAAACTCTGAAGACGAGTCATACACTATGAAAGAAGTGGAGAATTATGGTCCAAGTGGAAGGGAAAATGATGCACGTGACATTGATGTTTTTGGTTTATCTTCTGGATCAGGAGAGATACCTGTTACAAGTGATGACTTGTGGCAGTCTTTGGAAATATCGGATGAATCTTCTCTTGATGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTCATATTCCTAAAACCAATGAAAAAATACCATCCTATGATGAAGAAATATCAGATCATCAAAGGCTGCTAGATAGATTGCAGTTATATGATCTGATTGAATGTAAGGTTCAAGGAGATGGTAACTGCCAGTTTCGTTCTTTATCAGATCAACTCTATCGCTCTCCAGACCACCACAAATTTGTGCGGGAACAAATTATTCAACAGCTCAAGTCATACCCAGAAATATATGCGGGTTATGTTCCTATGGGTTACAGTGATTATTTGAAGAAGATGAGCAAGAGTGGTGAATGGGGTGATCATGTCACGCTACAGGCTGCTGCAGATTGGTATGGTGTCAAGATTTTTGTTATTACATCTTTTAAGGACACATGTTACATTGAGATTCTTCCACAGAGACAAAAATCTGGAAGAGTGATATTTCTGAGCTTTTGGGCAGAGGTGCATTACAACTCAATATATCCCGAAGGAGAATTGCCCACATCTCATACAAAGAAAAAGAAGAAATGGTGGAATTTCGGTGGCTAG 1074 0.4032 MATHDMDPDVVRWGLHLLDVCTLSHHRSPSIVTRYDPDLSRVEYVREGFCQDVYVENDEAVARAYQEELSQLDSMGASGISDFENERLRYAQDWPSSSNGNYNFDNESCRNSEDESYTMKEVENYGPSGRENDARDIDVFGLSSGSGEIPVTSDDLWQSLEISDESSLDGEVGKRLNQMVPIPHIPKTNEKIPSYDEEISDHQRLLDRLQLYDLIECKVQGDGNCQFRSLSDQLYRSPDHHKFVREQIIQQLKSYPEIYAGYVPMGYSDYLKKMSKSGEWGDHVTLQAAADWYGVKIFVITSFKDTCYIEILPQRQKSGRVIFLSFWAEVHYNSIYPEGELPTSHTKKKKKWWNFGG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1956 357 ProSiteProfiles OTU domain profile. 214 338 IPR003323 -
Apr8g1956 357 PANTHER OTU DOMAIN CONTAINING PROTEIN 23 355 - -
Apr8g1956 357 Pfam OTU-like cysteine protease 220 306 IPR003323 -
Apr8g1956 357 Gene3D - 196 343 - -
Apr8g1956 357 PANTHER OTU-LIKE CYSTEINE PROTEASE DOMAIN CONTAINING PROTEIN 23 355 - -
Apr8g1956 357 SUPERFAMILY Cysteine proteinases 177 337 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1956 Apr-Chr8 30177101 30184231 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1956 - - gmx:100820379 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g0501 8 4403026 4409137 Apr8g1956 8 30177101 30184231 ECH
Apr8g1956 8 30177101 30184231 Apr8g1956 8 30177101 30184231 ECH
Apr4g0206 4 1722925 1728926 Apr8g1956 8 30177101 30184231 PCT
Apr6g0549 6 7372527 7381542 Apr8g1956 8 30177101 30184231 PCT