Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1950 ATGGGTGGGAGCGAGAACTCGAAGGGCGTTGTTGTGGGTCATTTGATTGAGTCCGTGAAGGACATTTCTGGGTTGCCAGAATGCCAAAACTTTTGCAAGACTATGTATGGGAATTTGGTTCGCAGGGTGAAGCTGTTGAGTCCTCTGTTTGAGGAACTCAAGGATAGTGATGAGTCCTTAAGCGATGAACAGCTTCAAGCCTTTGAATCTCTCAGGGTTGCTTTGGATTCAGCTAAGACCCTTTTGAAGTCTGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCGGAGGACTGATACGGCAGGTAAGTTCCGACAAATAACCGAAAAAATTGAAGCTGCGCTGGGTGAAATTTCATATGACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAATTGGTGCATGCTCAATTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATATACAATTAGACCTGGATATGGCAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTATACTTAAAAGACTTTCTGAGAAGTTGCATCTTAGGACAATAAATGACCTAAAGAAAGAGTCTAGCGAATTACATGAATTGGTTATTACTAGCACAAGCGGAGAACTTGGGGACTCTTTAGAAATGATCTCGTCCCTTCTTAGGAAACTAAAGGACTGTGTGCTCACAGAAAATCCTGAAACTGACGCCACTGAAAGTGAAAAAGTCTCAGTTAAGCACAGGTCTCCTGTAATACCGGATGATTTTAGATGTCCCATATCTCTTGAACTAATGAAAGATCCTACATATGAAAGAGCCTGCATTCAGAAATGGCTTGATGCTGGTCATAAAACCTGTCCCAAGACACAGCAGACACTTTTGCATACAGCCCTTACACCTAACTATGTTTTGAAGAGTCTGATAGCTTTATGGTGTGAAAGCAATGGTGTTGAGCTACCAAAGAAGCAAGGTAGCTGTAGAGCAAAGAAATCTGGAAGCAGCCTTTCAGACTGTGATCAAACTGCCATTAGTGCTTTATTGGATAAACTGATGAGTAATGATATAGAACAGCAAAGGGCAGCTGCTGGTGAGCTCCGTTTGCTGGCTAAGAGGAATGCAGATAACAGAGTGTGTATTGCTGAGGCAGGAGCAATACCGCTTCTGGTAGATTTGTTGTCTTCTTCAGATCCTCGAACTCAGGAACATGCTGTTACAGCACTTCTCAACCTGTCCATTAATGAGAGTAACAAAGGAACTATAGTAAATGCAGGAGCTATACCAGATATTGTAGATGTACTGAAAAATGGAAGCATGGAGGCGAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTATCCGTTCTAGATGAATACAAGGTTGCAATAGGTGCAGCTGGTGCTATCCCTGCTCTTATAAATTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCTGCTACTGCTATATTTAATCTGTCTATATATCAGGGAAACAAAGCACGAGCCGTAAAAGGCGGCATAGTAGCCCCACTGATACAATTTCTGAAGGATGCTGGAGGTGGGATGGTAGATGAAGCACTAGCTATAATGGCAATTCTTGCAAGCCATCATGAAGGCAGGATAGCAATTGGTCAGGCTGAGCCAATCCCTATTATAGTTGATGTTATACGAACCGGATCTCCACGCAACCGGGAGAATGCTGCTGCTGTCTTGTGGTCACTTTGCACGGGAGATGTACTGCAGTTAAAACTAGCAAAGGAGCATGGTGCAGAAGAAGCATTACAGGAATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGACCTCTTACAGCGAATGGAAGGAAATGATAATTTTCAAAATTCTTAG 1875 0.424 MGGSENSKGVVVGHLIESVKDISGLPECQNFCKTMYGNLVRRVKLLSPLFEELKDSDESLSDEQLQAFESLRVALDSAKTLLKSVNQGSKLYQALRRTDTAGKFRQITEKIEAALGEISYDKLEISEEVQEQIELVHAQFKRAKAQTEFADIQLDLDMAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVITSTSGELGDSLEMISSLLRKLKDCVLTENPETDATESEKVSVKHRSPVIPDDFRCPISLELMKDPTYERACIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRAKKSGSSLSDCDQTAISALLDKLMSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDEYKVAIGAAGAIPALINLLCEGTPRGKKDAATAIFNLSIYQGNKARAVKGGIVAPLIQFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPIIVDVIRTGSPRNRENAAAVLWSLCTGDVLQLKLAKEHGAEEALQELSENGTDRAKRKAGSILDLLQRMEGNDNFQNS* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1950 624 Pfam U-box domain 248 311 IPR003613 GO:0004842|GO:0016567
Apr8g1950 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 314 IPR013083 -
Apr8g1950 624 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 379 421 IPR000225 GO:0005515
Apr8g1950 624 SMART Ubox_2 251 307 IPR003613 GO:0004842|GO:0016567
Apr8g1950 624 Gene3D - 323 619 IPR011989 -
Apr8g1950 624 Coils Coil 126 146 - -
Apr8g1950 624 CDD RING-Ubox_PUB 252 287 IPR045210 -
Apr8g1950 624 Gene3D - 10 121 IPR036537 GO:0007166
Apr8g1950 624 ProSiteProfiles U-box domain profile. 247 314 IPR003613 GO:0004842|GO:0016567
Apr8g1950 624 SUPERFAMILY RING/U-box 247 316 - -
Apr8g1950 624 Pfam Armadillo/beta-catenin-like repeat 452 489 IPR000225 GO:0005515
Apr8g1950 624 Pfam Armadillo/beta-catenin-like repeat 368 407 IPR000225 GO:0005515
Apr8g1950 624 SMART arm_5 532 572 IPR000225 GO:0005515
Apr8g1950 624 SMART arm_5 450 490 IPR000225 GO:0005515
Apr8g1950 624 SMART arm_5 409 449 IPR000225 GO:0005515
Apr8g1950 624 SMART arm_5 368 408 IPR000225 GO:0005515
Apr8g1950 624 PANTHER U BOX DOMAIN-CONTAINING 12 616 - -
Apr8g1950 624 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 616 - -
Apr8g1950 624 SUPERFAMILY ARM repeat 334 612 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1950 Apr-Chr8 30062099 30066273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1950 425 618 U-box Gene Family AT3G54850 32.821 4.36e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1950 - - gmx:100777452 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1950 8 30062099 30066273 Apr8g1950 8 30062099 30066273 ECH