Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1933 ATGGCGGCTGCTTCATCATCCACTCCATTCTTGGGAATCAGAGAAGAAAACTCAAGTCAGATTACACACCATCAACACTCCACAATTGCTCCAACCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAAAAGAAAGGTTTATTTGTGTCCCGAGCCCACTTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAACACTATTCTCGCAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCCAAGACTTGTGGCACTAGAGAATACAGATGTGATTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATGCGCTAGCACAAGAGAGCGCAAGGCACCCCAATGGCTTAAACCCTTTGGGGACTAATTTGTATGGCGCAAACCACATGAGTTTAGGCCTATCTCAAGTGGGTACCCAACTTTCCCAGCTGCAAAATCAGAACCAAACAGCCACTAACAACATTTTGCGCCTTGGCAGTGTTGGTGGTGCAGCAAAGTTTGAGCACTTGATCCCACCTCTAAATCAGTCTTCATTTGGACACTCGCCACAATCAATGCCTCCCTCAGCTTTCTTCATCACTGACAATACAAATCAAGCATTTGAAGAACACCAATCACATCAAGGACCATTCTCAAGCAAGCAACTACAAGGCCTCATGCAACTCCCAGATTTTCAAGGTAACACCAATAACTCCGATTCTTCATCAGTAGCTGCTCCTTCCAATCTTTTCAACCTCAGCTTCTTTCCAAATAGCAACAGCACTGGCACTATAATCACTGATCAATTCAACAACATAAGTGGTAGTGACCAAGGAACAACAACAGCACTCTATGTTAATAACAACCCTGCAGTTAGTGATCAAGTTGGTTCTGGTTTTTCTTCACTCTTTGGAGCCAATTCAATAGTGCAACATGAAAACTTGTCATCCCCTCATATGTCCGCCACCGCATTGCTCCAAAAAGCTGCTCAAATGGGCTCAACCACAACCCCAAACGGTTCTTCTTTACTTAGAGGAGTGTGTAGTTCCTCTAACAACAATGGTTCCAAATCTGAAAATGGACATCATACCACCAGTCTTCATGGGTTGATGAACTCTATTGCCAATGGTGGAAACACGTCCATGTTTGGAAACGAAAACAACCTTTTTCACAACGTGGAGGAGTCCCACAATAAGTTGCCACAAAATCTTAACGTAAGCTTTGGAGGGTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAGTGGTGAGAAACATGAGCGGTGGATTTTCACAAAGGGAACAACAACGTGTCATGGGTACTATGAGTTCTTCGGATCCTGACCTAAAGTCAGCACAGTCAACTCAACATTTTGGAAGGTCAACGCTGCAATAA 1641 0.4442 MAAASSSTPFLGIREENSSQITHHQHSTIAPTTVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGLNPLGTNLYGANHMSLGLSQVGTQLSQLQNQNQTATNNILRLGSVGGAAKFEHLIPPLNQSSFGHSPQSMPPSAFFITDNTNQAFEEHQSHQGPFSSKQLQGLMQLPDFQGNTNNSDSSSVAAPSNLFNLSFFPNSNSTGTIITDQFNNISGSDQGTTTALYVNNNPAVSDQVGSGFSSLFGANSIVQHENLSSPHMSATALLQKAAQMGSTTTPNGSSLLRGVCSSSNNNGSKSENGHHTTSLHGLMNSIANGGNTSMFGNENNLFHNVEESHNKLPQNLNVSFGGSDKLTLDFLGVGGVVRNMSGGFSQREQQRVMGTMSSSDPDLKSAQSTQHFGRSTLQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1933 546 MobiDBLite consensus disorder prediction 413 453 - -
Apr8g1933 546 MobiDBLite consensus disorder prediction 18 50 - -
Apr8g1933 546 Gene3D Classic Zinc Finger 45 114 - -
Apr8g1933 546 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 518 - -
Apr8g1933 546 SMART c2h2final6 142 162 IPR013087 -
Apr8g1933 546 SMART c2h2final6 66 88 IPR013087 -
Apr8g1933 546 SMART c2h2final6 107 137 IPR013087 -
Apr8g1933 546 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Apr8g1933 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 518 - -
Apr8g1933 546 MobiDBLite consensus disorder prediction 510 546 - -
Apr8g1933 546 Gene3D Classic Zinc Finger 120 199 - -
Apr8g1933 546 MobiDBLite consensus disorder prediction 18 43 - -
Apr8g1933 546 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Apr8g1933 546 Coils Coil 221 241 - -
Apr8g1933 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Apr8g1933 546 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1933 Apr-Chr8 29915293 29919489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1933 36 510 IDZ Gene Family AT2G02070 48.885 1.21e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1933 zf-C2H2_jaz 3.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1933 K25870 - gmx:100780268 807.749