Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1932 ATGGGAAGAAAGGGGAGTTGTGAGAATCAAGATGTGAACAGAGGTGCTTGGTCTGCTGAGGAAGACAAAATACTTATCAACTACGTTCAACTCCACGGAGAAGGAAAATGGAGGGAGCTTTCTAAAAGAGCTGGCTTGAAACGATGTGGGAAGAGTTGTAGACTCCGATGGTTGAATTATCTAAAGCCAGATATCAAGAGAGGAAACATTTCTTCAGATGAAGAAGATCTCATTATCCGACTACATAACCTCTTAGGGAATAGATGGTCTCTTATCGCGGGGCGATTACCAGGACGCACGGACAATGAGATTAAGAATTATTGGAATACTTATTTGAGAAAGAAGGTTGAACAGAAGCACAATCATAACAAAGTTCCCAATCATAGCAACAACATTCCTATCAAATTAAGAGTTGAATCTCCTGGATGTTCAAAAAACTCCTTGGGTATTATTGATCCAACAAAATCCCCTCACCCTATGACGATTAAACCAAAATCAATGAGGTGCACCAAGGTTATGATGCCAACCAATGCAGCCAATGACTCAGTCAACCCAATGATGAATTTAATCACAACGAGTTGGAATGACCAGAACCCTTTTGGATCCACTCCACCACAAGATGACCATGATCATTGCTTAGCAAGTTTTTTGAATGACTTTAACATCAATGACCTATTAATGCCTTACGAGGATTGTCATTTTAATGGATATGCTTGTGTCGAAATACCTCAACATTTTGGAGATCAAACTTGCCAGGTTGATGATTTGATAGGCAATGCATGGTATGAGAATGGGAGGATTGACGACTATTTCGTACCAGAACAAGATGTGAGTCTTTTTTCATTTTAA 849 0.3958 MGRKGSCENQDVNRGAWSAEEDKILINYVQLHGEGKWRELSKRAGLKRCGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEQKHNHNKVPNHSNNIPIKLRVESPGCSKNSLGIIDPTKSPHPMTIKPKSMRCTKVMMPTNAANDSVNPMMNLITTSWNDQNPFGSTPPQDDHDHCLASFLNDFNINDLLMPYEDCHFNGYACVEIPQHFGDQTCQVDDLIGNAWYENGRIDDYFVPEQDVSLFSF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1932 282 Gene3D - 70 135 - -
Apr8g1932 282 CDD SANT 16 61 IPR001005 -
Apr8g1932 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Apr8g1932 282 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr8g1932 282 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr8g1932 282 SMART sant 13 63 IPR001005 -
Apr8g1932 282 SMART sant 66 114 IPR001005 -
Apr8g1932 282 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr8g1932 282 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 270 - -
Apr8g1932 282 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 270 - -
Apr8g1932 282 CDD SANT 71 112 IPR001005 -
Apr8g1932 282 Gene3D - 6 67 - -
Apr8g1932 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Apr8g1932 282 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr8g1932 282 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1932 Apr-Chr8 29901422 29902789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1932 7 229 MYB Transcription Factor Family AT3G13540 46.725 2.10e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1932 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1932 K09422 - gmx:100780809 412.92