Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1931 ATGCCCAGAAAAACCAGCTGTGAGAATCAAGATGCTGTGAACAGAGGTGCTTGGTCTGCTGAGGAAGACCAAATCCTTATCAACTACGTTCAAGTTCATGGAGAAGGAAAATGGAGAGAGCTTTCCAAAAGAGCTGGCTTGAAACGAAGTGGGAAGAGTAGCAGACTCAGATGGTTGAATTATCTAAAGCCAGATGTCAAGAGAGGAAACATTTCTTCTGATGAAGAAGATCTCATTATTCGACTACATAATCTCTTAGGCAATAGGTGGTCTCTCATTGCGGGGCGATTACCAGGCCGAACAGACAATGAAATCAAGAACTATTGGAACGCTCGTTTGAGAAAAAAGTTAGAGAAGAAAAAGTGCAACCATAGCATAACTCCACACCTTCATTCTAATAAAGTCCCAAGCAAATTAAGAGTTGAACCTGTAGAGTGCACAAAAAATTCTTCCCATGGCATTGCTACTACGAAGTCCTCCATCCCTACCAAGGTTATGGTGTCAAAGTATGCAGCCAATGATTCAGTCAACACAATGAACAGTGTAACGTGTTGGGATAGCCACAACCCTTCTGCATGCACCCCAGAAGATGATCATGACAATTGCTCTTCAGGTTTCCACAAACCATTTGAAATTTGTGACCAGCTAATGATATCATACGAGGATTCCCATTATGGATATGCATGTGTTGAAATACCCGAGCACTTTGGAGATGAAGCTACTTGCTGGCTTGATGATTCAATAGACCAAGTGACTCAAAAGTCGACAAAGTCCAATTCCATGTCTTGCTTAAATGAACAAAACCCATCAACGCTGCATGGTGGCACAACCATGTCCACTAGCAACTTCATTAAATGA 858 0.4196 MPRKTSCENQDAVNRGAWSAEEDQILINYVQVHGEGKWRELSKRAGLKRSGKSSRLRWLNYLKPDVKRGNISSDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNARLRKKLEKKKCNHSITPHLHSNKVPSKLRVEPVECTKNSSHGIATTKSSIPTKVMVSKYAANDSVNTMNSVTCWDSHNPSACTPEDDHDNCSSGFHKPFEICDQLMISYEDSHYGYACVEIPEHFGDEATCWLDDSIDQVTQKSTKSNSMSCLNEQNPSTLHGGTTMSTSNFIK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1931 285 CDD SANT 72 110 IPR001005 -
Apr8g1931 285 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Apr8g1931 285 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 248 - -
Apr8g1931 285 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 248 - -
Apr8g1931 285 Gene3D - 7 68 - -
Apr8g1931 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Apr8g1931 285 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr8g1931 285 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Apr8g1931 285 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Apr8g1931 285 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Apr8g1931 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr8g1931 285 SMART sant 14 64 IPR001005 -
Apr8g1931 285 SMART sant 67 115 IPR001005 -
Apr8g1931 285 MobiDBLite consensus disorder prediction 259 285 - -
Apr8g1931 285 Gene3D - 72 140 - -
Apr8g1931 285 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1931 Apr-Chr8 29888874 29892039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1931 3 135 MYB Transcription Factor Family AT3G13540 60.150 1.36e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1931 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1931 K09422 - gmx:100780809 308.145