Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1918 ATGATACAGGAAGATCAATTAGGACAGTGTTCTTCTTCTCAAGCGATCAATAACTTCCATCAGAGCTATCAAGAGCAGTTTCTCCTTCAGCAACAGATGCAGCAACAAAACAGTGATATCTTTGGTGGAGGAAGAGGAGGATTGAACATGTTCCCCGGTGAAGTTTCTCCAATCTTGGAACCATGGTCTATGCCTCCGGTTCACCCCTTCAACCCGGTGAGAGAGCACGACCCTTTTCTTGTTCCTCCACAACCTTCACCCTATGCAAGTTTGTTCAACAGAAGGGCTCCTTCTCTTCAGTTTGCATATGATGGTTCATCTTCTCATGACCATCTTAGGATCATATCAGATAACCTTGGTGTTGGGCAGGTGGTTCCACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGCAAGATGACAGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCGGCTTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCACCTTGCCAAACTCCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACACGTGAAGGAACTGAAGCGTCAAACATCGTTGATAGCAGAAACGAGTCCAGTTCCTACCGAGGCCGATGAGTTAACAGTGGATGCAGCTGATGAAGATGGCAAGTTTGTGATCAAAGCCTCGCTTTGTTGTGATGATAGGTCAGATCTGTTGCCTGAACTCATCAAGACTTTGAAAGCGTTGAGGTTAAGAACCCTCAAAGCTGAGATCACAACGCTTGGTGGGCGTGTCAAGAACGTGTTGTTCATCACTGGGGAAGAAGACTATTCCAGTAGTAGCAGTGAGGAGCATGGCCACCAACAACAGTATTGCATTAGCTCCATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGCCTTGGGGATGAGTCTGCCTCTGCAAGTATTAAGAGACAAAGGACCAATATAATATCAATATCCTAG 1014 0.4645 MIQEDQLGQCSSSQAINNFHQSYQEQFLLQQQMQQQNSDIFGGGRGGLNMFPGEVSPILEPWSMPPVHPFNPVREHDPFLVPPQPSPYASLFNRRAPSLQFAYDGSSSHDHLRIISDNLGVGQVVPPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGKFVIKASLCCDDRSDLLPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDYSSSSSEEHGHQQQYCISSIQEALKAVMEKSLGDESASASIKRQRTNIISIS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1918 337 PANTHER TRANSCRIPTION FACTOR BHLH30 67 336 - -
Apr8g1918 337 PANTHER TRANSCRIPTION FACTOR BHLH30 67 336 IPR045847 GO:0003700|GO:0006355
Apr8g1918 337 Gene3D - 148 209 IPR036638 GO:0046983
Apr8g1918 337 CDD bHLH_AtAIG1_like 148 226 - -
Apr8g1918 337 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Apr8g1918 337 SMART finulus 159 208 IPR011598 GO:0046983
Apr8g1918 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 209 IPR036638 GO:0046983
Apr8g1918 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1918 Apr-Chr8 29721795 29724044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1918 12 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.865 8.25e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1918 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1918 - - pvu:PHAVU_007G101900g 501.516