Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1917 ATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCCAAGTCCCTCCAAGCTCTGCTTGCTCATGCCTTTCTCTTCTCCTTTACTCTTCTTCTTGCTCTCAAGCTTGACCGTTTCATTCATTATGCATGGTGGGTTGTATTTTTTCCTCTGTGGCTTTTTCATGCTGTGGTAGCACGGGGCAGGTTTTCCTTGCCGGCTCCTTCAATGCCTCATGATCGCCGATGGGCTCCTTGTCATTCAGTCGTAGCTACACCATTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTGGGCAGCAGTTATGCGATGAATTTAAAGATTGTCTTCGTACCCCTGATAGTTCTTGAAGTGGTGATTTTGATTGATAATGTCAGGATGTGTAGGGCTTTGATGCCTGGAGATGATGAAAATTTGACTGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTTATCGCTGCCACAGTGTTCACCCTACTAAAGATATGTGGTGATGTTGCTGCTCTAGGATGGTGGGACTTATTTATTAATTACGGAATTGCACAGTGCTTTGCGTTTCTTGTTTGTACAAAAGCAGGCTTAGTTATTACCACCAATGAAGATGGGCGGCAAAATGGATTCTGCAATCTGCAGGACATTTGTGGGCATATTATGAAAATTCCATTCATTGGTTTCCAAATACTTATTTTTATGCATTTAGAGGGAACACCATCCAGCGCAAAATATATGCCAAATTGGGTCATTTTTTCACCCCTCTTTCTGTTGCAAGGAGTCGGGGTTTTGTTTGCAACATATAGATTAATAGAGAGGATAGTTCTTTTACTCTACACTGGAGATATTCCTAGAAGATACTCAGCTGTAGCATCAAGATCCCGTGAATGCTTTGGCTTCTTTCGTCGTGGATCAAGGTTACTTGGTTGGTGGTCAATAGATGAAGGGAGTAAAGAGGAAGAAGCTAGACTTTTTTGTGCTGGGAATTCTGGGTACAATACTTTCACCCCGGATACAGTGAAAAAAATGCCTAGAACAGATCTGGTTGAGGAGATTTGGAGACTACAAGCTGCGCTGGGTGAACAAACAGAAGTTACAAAATTTAGCCAAGAGGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTCGAAGAGCAGATTAATGTGGTCCTACTTCCCTGCAGGCATCACATTCTTTGCAGCACTTGCTGCGAAAAATGCAAGAGGTGTCCTGTGTGCCGCGGCCCCATCAAAGAACGGATGCCTGTGTATGATGTGTAG 1317 0.4313 MLVRRRVMSWRRVAKSLQALLAHAFLFSFTLLLALKLDRFIHYAWWVVFFPLWLFHAVVARGRFSLPAPSMPHDRRWAPCHSVVATPLLVAFELLLCIHLGSSYAMNLKIVFVPLIVLEVVILIDNVRMCRALMPGDDENLTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKAGLVITTNEDGRQNGFCNLQDICGHIMKIPFIGFQILIFMHLEGTPSSAKYMPNWVIFSPLFLLQGVGVLFATYRLIERIVLLLYTGDIPRRYSAVASRSRECFGFFRRGSRLLGWWSIDEGSKEEEARLFCAGNSGYNTFTPDTVKKMPRTDLVEEIWRLQAALGEQTEVTKFSQEEYERLQNEKILCRVCFEEQINVVLLPCRHHILCSTCCEKCKRCPVCRGPIKERMPVYDV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1917 438 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 202 - -
Apr8g1917 438 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 203 438 - -
Apr8g1917 438 SUPERFAMILY RING/U-box 382 434 - -
Apr8g1917 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 437 IPR013083 -
Apr8g1917 438 ProSiteProfiles Zinc finger RING-type profile. 391 426 IPR001841 -
Apr8g1917 438 Pfam Zinc finger, C3HC4 type (RING finger) 389 431 - -
Apr8g1917 438 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 203 438 - -
Apr8g1917 438 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 202 - -
Apr8g1917 438 Pfam Transmembrane Fragile-X-F protein 35 266 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1917 Apr-Chr8 29702315 29711781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1917 8 438 C3H Transcription Factor Family AT1G73950 67.654 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1917 - - gmx:113000756 779.63