Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1915 ATGGTATCATTGGATTGCAAGAGGGTAGCAGAAGAGTGGCCTGGACTACCTAAAGGCGTAAAGTTTGATCCATCTGATCAAGAAATAATATGGCACTTACTTGCAAAAGTTGGTGCAGGACATTCAAAACCTCACCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAATATTTACCAGGTGTCAAGCAAGATGGAAGGGCTTCCCACTTTTTCCACGGAACAATCAAGGCTTATAATACTGGCAGTCGAAAGCATCGAAAAATATATGATCAGGGTTTTGGTGATGTCCCCTGGCATAGGACGGACAGGACTAAACCTGTCAGCTTGAATGGAGTTCAAAAGGGTTGTAAAAAGATTATCGTCCTGTATGTAAGCCTGGTGAGTGGAGGAAAATCTGAGAAAACTAATTGGGTTATGTATCAATATCATCTAGGAACAGGAGAGGATGAAAAGTATGGACTACCAAAGCATCCTCAGATGGATTGTCTAGCTGACATTCAGGCTGATTATGAAGATCTTGTAAAAGATGATCTATCGATTGTAGAAACTCAAAAGAATGAAGGGATAGACAACGTAGAAAATAATACTGATGAATACTTAAAATGGTGGGATAGTGGGTCACAGAATCTGTTGAGTTCACAACTTGTTGAAGCATTTCTGTGTGATGATCTCCTTCAAAGTCAGTCTCCCAACAGGGATGAGGAAAATGGACATGACGAACGACCCAGTCTTTCTGTTTACGCCCACCTAGGACCCGAGCATCTCAAGAAAGATATTGAAGAGTGCCAAAATTTTGTCCTTGACACTGCAAATGTAGAGCCCAAGACACCATCTTCAGAGTTTCAACTAAGTCAGCTGGAATTCAGTTCACAGGACAGCTTTATTTCCTGA 924 0.408 MVSLDCKRVAEEWPGLPKGVKFDPSDQEIIWHLLAKVGAGHSKPHPFIDEFITTLEVDDGICYTHPQYLPGVKQDGRASHFFHGTIKAYNTGSRKHRKIYDQGFGDVPWHRTDRTKPVSLNGVQKGCKKIIVLYVSLVSGGKSEKTNWVMYQYHLGTGEDEKYGLPKHPQMDCLADIQADYEDLVKDDLSIVETQKNEGIDNVENNTDEYLKWWDSGSQNLLSSQLVEAFLCDDLLQSQSPNRDEENGHDERPSLSVYAHLGPEHLKKDIEECQNFVLDTANVEPKTPSSEFQLSQLEFSSQDSFIS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1915 307 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 170 306 IPR044799 GO:0003700
Apr8g1915 307 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Apr8g1915 307 Pfam No apical meristem (NAM) protein 17 155 IPR003441 GO:0003677|GO:0006355
Apr8g1915 307 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 164 IPR044799 GO:0003700
Apr8g1915 307 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 5 164 - -
Apr8g1915 307 Gene3D NAC domain 25 197 IPR036093 GO:0003677|GO:0006355
Apr8g1915 307 ProSiteProfiles NAC domain profile. 16 178 IPR003441 GO:0003677|GO:0006355
Apr8g1915 307 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 170 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1915 Apr-Chr8 29689559 29691808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1915 13 164 NAC Transcription Factor Family AT5G56620 54.268 4.71e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr8g1915 NAM 6.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1915 - - aprc:113871755 638.647