Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1912 ATGGATGGAGGCAGCTCCACAGACGATACCACCACAAGCAGTGACTCTCTTTCCGCATGCCTAATTCCGGCGAAGCAATCTCCGCCGTCGACCAACACTCCCAGCCGCGTTGACCTCGACGGTTGCGGAGGCTCCGGCGAGGCTGACTCCCGGAAACTTCCGTCGTCGAAATATAAAGGCGTGGTGCCACAACCGAACGGCCGTTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACAAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCGGCGCAGAGATTCCGCGGTAAAGACGCCGTCACGAATTTCAAGCCCATCGCCGGCGCCGGCGAAATTTCCGACGACGCCGAAGCGCAGTTCCTCAACTCGCATTCCAAATCCGAGATCGTGGACATGCTTCGCAAGCACACGTACGACGACGAGCTCCAGCAGAGCAAGCGCGGCACGAGCCACCGCGGGGGCGAGATCGGCAAGTCCACATCGCGTGGCATGTGCGACGCGAGGGCGCGTGAGCAGCTGTTCGAAAAAACGGTTACGCCGAGTGACGTGGGGAAGTTGAATCGGTTGGTGATACCGAAGCAGCACGCAGAGAAACACTTTCCGTTGGGCAGTATCGCCGGCGAAAGAATATCGCCGTGCGTGGCGGCGACCAAGGGCGTCCTCTTGAATTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAAAGCTATGTGTTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAATCTGAGAGCCGGTGATGCGGTTCGGTTTTACAGGTCGACCGGACCGGAGAGACAGCTTTATATAGACTGCAAGGGAAGGAGTGTGAATGATGTCGATGCTAACAGGGGTGGTTTGTTTATTCCGGTTGGACCGGTAGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTTAACCTTTTGAAACTACCCGGTTCGGATGTTGTTAGGGTTGGTTGCAATGGGAAGAGGAAAGAGATGGAACTGTTTGCCTTAGAGTGTAGCAAGAAGTTTAAGATTGTTGGAGCTTTGTAA 1092 0.5577 MDGGSSTDDTTTSSDSLSACLIPAKQSPPSTNTPSRVDLDGCGGSGEADSRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNKEDEAARAYDIAAQRFRGKDAVTNFKPIAGAGEISDDAEAQFLNSHSKSEIVDMLRKHTYDDELQQSKRGTSHRGGEIGKSTSRGMCDARAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGSIAGERISPCVAATKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFYRSTGPERQLYIDCKGRSVNDVDANRGGLFIPVGPVVEPVQMVRLFGVNLLKLPGSDVVRVGCNGKRKEMELFALECSKKFKIVGAL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1912 363 Gene3D AP2/ERF domain 56 113 IPR036955 GO:0003700|GO:0006355
Apr8g1912 363 ProSiteProfiles AP2/ERF domain profile. 57 112 IPR001471 GO:0003700|GO:0006355
Apr8g1912 363 SMART rav1_2 57 118 IPR001471 GO:0003700|GO:0006355
Apr8g1912 363 MobiDBLite consensus disorder prediction 1 38 - -
Apr8g1912 363 CDD AP2 56 111 IPR001471 GO:0003700|GO:0006355
Apr8g1912 363 Pfam B3 DNA binding domain 182 284 IPR003340 GO:0003677
Apr8g1912 363 SUPERFAMILY DNA-binding pseudobarrel domain 181 292 IPR015300 -
Apr8g1912 363 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Apr8g1912 363 SMART B3_2 182 294 IPR003340 GO:0003677
Apr8g1912 363 MobiDBLite consensus disorder prediction 1 64 - -
Apr8g1912 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 363 IPR044800 GO:0003700
Apr8g1912 363 Gene3D - 172 304 IPR015300 -
Apr8g1912 363 MobiDBLite consensus disorder prediction 149 170 - -
Apr8g1912 363 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 363 - -
Apr8g1912 363 SUPERFAMILY DNA-binding domain 56 112 IPR016177 GO:0003677
Apr8g1912 363 CDD B3_DNA 181 279 IPR003340 GO:0003677
Apr8g1912 363 ProSiteProfiles B3 DNA-binding domain profile. 182 292 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1912 Apr-Chr8 29657207 29658603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1912 5 362 RAV Transcription Factor Family AT1G13260 57.951 1.78e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Apr8g1912 B3 1e-26 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1912 K09287 - gmx:100789009 513.457