Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1911 ATGCAGAAAACAATCTCTTTCTCCTGCGTATCCTCTTGCGGCAGTGAGAGTGGCTGCTTAGAAGCTGGTGAAGTTGATCACCCAGATTCCATCTCCCTCTCCCTTGCCCCTCCTGGCCAACCCAAATCCAAACACCCAAACCCAGACCCAAACCACTCGGATCATGATCACCACATAGTAAACCCTACCTCTCATGCCCATAGTGCTGTAACCGTTGCTCTTCACATTGGCCTTCCCACCACTGCTACCACACCTTCTTCCATTCCCAATATTCAGCCTCAATATTGGATCCCTACTCCTCAACAAATCCTTATTGGACCCACCCAGTTTTCTTGCACAGTCTGTAACAAAACCTTCAACCGTTTCAATAACATGCAGATGCACATGTGGGGACATGGATCGCAGTACAGGAAAGGACCTGAGTCATTGAGAGGGTCAAAGCCAGCTTCTTCGGTGCTGGGGCTTCCTTGCTATTGCTGTGCAGAGGGTTGCAAGAACAACATAAACTATCCAAGGGCAAGACCGCTGAAGGATTTCAGGACCCTTCAGACACACTACAAGAGGAAGCACGGAGGGAAGTCATTCGAGTGCAGAAAGTGTCTTAAGCCATTTGCAGTGAGAGGAGATTGGAGGACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGTGTCTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAAGATCATGTCCGTGCTTTCGGCAGTGGCCACGCTCCACACACCTTGGAGTCCTTGATTTGTGATAGAGAAAGAGGTCATGAAGACTACGTGGAGGAAGAAGAAGAAGACGGTGGAGATGATAACAGTGAAGTAGTTGCTGTTACTTTTTCAAATAACACAATGTAA 873 0.4788 MQKTISFSCVSSCGSESGCLEAGEVDHPDSISLSLAPPGQPKSKHPNPDPNHSDHDHHIVNPTSHAHSAVTVALHIGLPTTATTPSSIPNIQPQYWIPTPQQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGSKPASSVLGLPCYCCAEGCKNNINYPRARPLKDFRTLQTHYKRKHGGKSFECRKCLKPFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLKDHVRAFGSGHAPHTLESLICDRERGHEDYVEEEEEDGGDDNSEVVAVTFSNNTM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1911 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Apr8g1911 290 SMART c2h2final6 195 215 IPR013087 -
Apr8g1911 290 SMART c2h2final6 158 190 IPR013087 -
Apr8g1911 290 SMART c2h2final6 110 132 IPR013087 -
Apr8g1911 290 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Apr8g1911 290 PANTHER ZINC FINGER PROTEIN WIP6 1 278 - -
Apr8g1911 290 Gene3D Classic Zinc Finger 109 132 - -
Apr8g1911 290 MobiDBLite consensus disorder prediction 28 61 - -
Apr8g1911 290 MobiDBLite consensus disorder prediction 47 61 - -
Apr8g1911 290 PANTHER ZINC FINGER PROTEIN WIP2 1 278 IPR043584 GO:0003700|GO:0010468
Apr8g1911 290 SUPERFAMILY beta-beta-alpha zinc fingers 101 132 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1911 Apr-Chr8 29643898 29645093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1911 29 255 C2H2 Transcription Factor Family AT1G13290 68.085 6.20e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1911 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1911 - - gmx:100788243 410.223