Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1910 ATGAGAAGCTCTTTCTCTCTCTTCAGACCTCTCTGCTGCTTCCACAGAACGCCATTTCCTTATATATTCCTTCTCCCTCTTCATCTTCTTCATCACCTTCTTCTTCTTAACGCCACCACCTTCAAAATGCAGCGCCTTAAGATGGGGTTCCCTCACTACATCCAAGCATTGGAAGAAGAACGCCGCAAGATTCAGGTGTTTCCTAAAGAGCTTCCTCTTTCCTTGGAACTAGTCACACAAGCCATTGAAGCTTGCAAACAGCAATTGTCTGGCACCACAACTGAGTATAATTTGAATGGACAATCGGAGTGTTCAGAGCAGACAACATCAACGGAAGGTCCTGTTTTGGAGGAGTTCATTCCAATTAAGAAAAGGGCATCTTCCCCTTATTGTGATGAAGATGATGAGGATGAACAGCATTCTCACAAGCAAAATGTTTCAAAGGATAATAAGAACAATGATAAGACGAAATCAGATTGGCTTAGATCTGTTCAGTTGTGGAATCCAGATCCCCCCGCTGAGGAGAAAGTGCCTGTGATGGATTTGAAGAGAAGTGGAAATAGTGGTGGTGCTTTCCTGCCATTCCACAAAGAAGAAAGAGCTATCAAGACAAGTGAATCATTGAGTGAAGCACCCTCTTCTGCCCGAGTACCCGCGGCGAGTTCTAAGACGATTACAGTCACCGGGGAGAATGCTGGAAGCAGTAAAAGAGAGGAGAGAGAGGGACGGAGAAAGCAGCGCCGGTGCTGGTCACAGGACTTGCATAAGCGCTTCTTGCACGCCCTTCAGCAGCTTGGGGGTGCAGATTCTGCCACACCAAAGCAAATCAGAGAGCTAATGAATGTTGAGGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACACTAGGAGGCCAAGTACCATAGTTCACGACAGTGCCAATCCACACACGGCACCTTTTGTCCTTGTAGGGAACATTTTTGTTCAATCATCAGAATATGCAGCTGTAGCTACCTCAACAGCATCAAGGGAAGTGACCACAGTTGCAGCACCTGCAGGTATTTATGCACCTGTGGCCACACATCCTCCGGCTGTTAAACATCCACCAACTGATTCAATTAAGAAGCCACACTTTAAGAAAGTGGAGCTGTTTGAGCATTCAAATTCAGAAGAAAGGGGCAATCACAGTGAAGGGGCTGTGCATTCAAATTCCCCTGCCTCATCATCCTCCACCCATACCCCTACTACTTCTCCTGGCTATTGA 1260 0.4627 MRSSFSLFRPLCCFHRTPFPYIFLLPLHLLHHLLLLNATTFKMQRLKMGFPHYIQALEEERRKIQVFPKELPLSLELVTQAIEACKQQLSGTTTEYNLNGQSECSEQTTSTEGPVLEEFIPIKKRASSPYCDEDDEDEQHSHKQNVSKDNKNNDKTKSDWLRSVQLWNPDPPAEEKVPVMDLKRSGNSGGAFLPFHKEERAIKTSESLSEAPSSARVPAASSKTITVTGENAGSSKREEREGRRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIRELMNVEGLTNDEVKSHLQKYRLHTRRPSTIVHDSANPHTAPFVLVGNIFVQSSEYAAVATSTASREVTTVAAPAGIYAPVATHPPAVKHPPTDSIKKPHFKKVELFEHSNSEERGNHSEGAVHSNSPASSSSTHTPTTSPGY* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1910 419 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 245 300 IPR006447 GO:0003677
Apr8g1910 419 MobiDBLite consensus disorder prediction 367 396 - -
Apr8g1910 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 41 415 IPR044787 GO:0003700|GO:0006355
Apr8g1910 419 Pfam Myb-like DNA-binding domain 247 298 IPR001005 -
Apr8g1910 419 MobiDBLite consensus disorder prediction 358 419 - -
Apr8g1910 419 MobiDBLite consensus disorder prediction 206 232 - -
Apr8g1910 419 MobiDBLite consensus disorder prediction 233 248 - -
Apr8g1910 419 Gene3D - 244 302 - -
Apr8g1910 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 302 IPR017930 -
Apr8g1910 419 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 41 415 - -
Apr8g1910 419 MobiDBLite consensus disorder prediction 128 158 - -
Apr8g1910 419 MobiDBLite consensus disorder prediction 203 248 - -
Apr8g1910 419 SUPERFAMILY Homeodomain-like 243 303 IPR009057 -
Apr8g1910 419 MobiDBLite consensus disorder prediction 397 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1910 Apr-Chr8 29627494 29629704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1910 41 410 G2-like Transcription Factor Family AT1G13300 45.358 7.73e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr8g1910 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1910 - - aprc:113872943 762.681