Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1905 ATGGAACTTCTGTCAGTGTCTGCCACATTCACCAAATGTCGAAACTTTTCCTTTCTCAAACCAAAGAGAACCCAAATTCAACAACTTCCAATAAACATAAAATTTCACAACAAAAGGAATCATTTCGACCTTTCTTCTTCTTCTTCCATTTCATGTAATTGCTCCTTTACTGGAGTGGCAGCAACAACATACCCTTCCACCACACAAAACCGCCATTGGATGGTGCTCATGGAAAAGCCTCCTCATGAGGTCAATTCCAAGCCACAGGTCATTGATTATTACGTTAACACTCTACAGACGGTTCTTGGCAGTGAGAAAGAAGCTCAGATGTGTATATATGATGCTTCATGGGATACCCATTTCGGTTTTTGTTGTGATATTGATGAAGAAATTTCTTCCCAGCTGGCTAGTTTGCCTGGGGTCTTATCGGTTATGCCTGATGATTTCAACTCTTTGAAAAAGGACTATAGTTTGTCAAGTGGCCAGGCAAGTCCCCTGTCTAGATTACAAACTAGAACCAATATGTTGTTTCCTGCTAGAAATTCAAGGCATTGGCTAGTAAGAATGGATAAACCCGGAGTTGAGGTTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAGATTTTGACCAAGGTCCTGGGAAATGAGAAGGATGCACAAATGTGCATATATCATGTTTCCTGGAAAACCAACTTCGGCTTTTGCTGTGAACTTGATGAGGATTGTGCACAGGAGCTAGCTGGTGTGCCGGGTGTCTTATCAGTTCAACCAGATAACGATTCTGAGTCTGAAAATAAGGATTATGAAGGTAGTAACTTAGAAAATAGTTTGAATGTGCCCAACTCTTCCGAAGCAAGTCAGGAAGCTTCCTTGAAAACAAAGAAACTTTTTGTAACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTATTGAATACACCACAGAGGAGGCTGCAAGTGCAGCGCTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTTGATGTTGCCAAGCCTAACCGAACAAGATACAACAGGGATGGTACCAGACCATCAGCTTGA 1164 0.4081 MELLSVSATFTKCRNFSFLKPKRTQIQQLPINIKFHNKRNHFDLSSSSSISCNCSFTGVAATTYPSTTQNRHWMVLMEKPPHEVNSKPQVIDYYVNTLQTVLGSEKEAQMCIYDASWDTHFGFCCDIDEEISSQLASLPGVLSVMPDDFNSLKKDYSLSSGQASPLSRLQTRTNMLFPARNSRHWLVRMDKPGVEVVTKAQIVDYYAQILTKVLGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVPGVLSVQPDNDSESENKDYEGSNLENSLNVPNSSEASQEASLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNRTRYNRDGTRPSA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1905 387 Gene3D - 262 387 IPR012677 -
Apr8g1905 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Apr8g1905 387 SMART rrm1_1 296 369 IPR000504 GO:0003723
Apr8g1905 387 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 175 261 IPR037045 -
Apr8g1905 387 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 55 153 IPR037045 -
Apr8g1905 387 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 27 385 - -
Apr8g1905 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Apr8g1905 387 MobiDBLite consensus disorder prediction 254 285 - -
Apr8g1905 387 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 27 385 IPR039206 GO:0016554
Apr8g1905 387 SUPERFAMILY RNA-binding domain, RBD 283 382 IPR035979 GO:0003676
Apr8g1905 387 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1905 Apr-Chr8 29571452 29575564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1905 287 385 C2H2 Transcription Factor Family AT2G19380 32.673 3.36e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1905 - - gmx:100791652 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1905 8 29571452 29575564 Apr8g1905 8 29571452 29575564 ECH