Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1901 ATGTCTCAGACTGTTGTCCTCAAAGTTGGAATGTCCTGTGAAGGCTGTGTTGGAGCAGTGAAGAGAGTTCTGGGAAAGTTGGATGGTGTGGAATCATATGACATTGATTTAAAGGAACAGAAGGTGGTAGTGAAGGGAAATGTCCAGCCAGACACAGTTCTGCAGACTGTCTCTAAGACTGGCAAGAAGACTAGCTTCTGGGAAACTGAAGCACCTTCTGAAACCAAAGCTTAA 234 0.4487 MSQTVVLKVGMSCEGCVGAVKRVLGKLDGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGKKTSFWETEAPSETKA* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1901 77 SUPERFAMILY HMA, heavy metal-associated domain 1 68 IPR036163 GO:0046872
Apr8g1901 77 Gene3D - 1 66 - -
Apr8g1901 77 ProSiteProfiles Heavy-metal-associated domain profile. 3 66 IPR006121 GO:0046872
Apr8g1901 77 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 77 IPR045181 GO:0046872
Apr8g1901 77 PANTHER COPPER TRANSPORT PROTEIN CCH 1 77 - -
Apr8g1901 77 CDD HMA 10 65 IPR006121 GO:0046872
Apr8g1901 77 Pfam Heavy-metal-associated domain 7 63 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1901 Apr-Chr8 29519460 29522109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1901 1 76 Primary Pumps ATPases AT1G63440 26.582 2.40e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1901 K07213 - gmx:100799342 139.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1901 8 29519460 29522109 Apr8g1901 8 29519460 29522109 ECH