Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr8g1892 | ATGATTTCTTCAGGAATTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTCATCTGCGCTCGAATTCACTTGAATGCTTCAAGGAGATCCTTTCCCATAATTGCTTCCAGATCCAATCTCAGCATGATGGAGCGAGGTTGCCATGGTCTTGAACGCATAGCTGTAGCTAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCTGCAGAAAATTCTCAATGCACAGTCTGCCTTTCAGAGTACCAAGGGGAAGATACACTGCGAATCCTCCCTTATTGTGGACACTCCTTCCATGTGATCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCTGTTTGTCGAATATCACTGCGTGAATTTCCTGAGGGAAAGCGATTGATGCAACCCTTGTTCAGCTCTTCTTTGCAACCTCATTATGGCATTGAATCCTTTGACACTCATCATTATCACTGCATGATGGCTGACACCGGATTGTCGTCAAGAGCCCCTGATAACCATGGTGTGAATCCTACAGACGAGGATCATTTTCCATCCGAGGGTGGTGGAGCAGTTGATATGGACAATGTCACCCGTTTAAGTCAGGGTGATTTCATTAAAGATGAAAGGAAGAAGCATGTTGAGAGCCCATCAAATTTCCAGATTTGA | 693 | 0.4459 | MISSGINLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFPIIASRSNLSMMERGCHGLERIAVAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDTLRILPYCGHSFHVICIDLWLQQNSTCPVCRISLREFPEGKRLMQPLFSSSLQPHYGIESFDTHHYHCMMADTGLSSRAPDNHGVNPTDEDHFPSEGGGAVDMDNVTRLSQGDFIKDERKKHVESPSNFQI* | 231 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr8g1892 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 130 | IPR001841 | - | |
| Apr8g1892 | 230 | PANTHER | OS11G0150450 PROTEIN | 1 | 227 | - | - | |
| Apr8g1892 | 230 | Pfam | Ring finger domain | 87 | 130 | IPR001841 | - | |
| Apr8g1892 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 135 | IPR013083 | - | |
| Apr8g1892 | 230 | PANTHER | OS11G0150450 PROTEIN | 1 | 227 | - | - | |
| Apr8g1892 | 230 | MobiDBLite | consensus disorder prediction | 211 | 230 | - | - | |
| Apr8g1892 | 230 | MobiDBLite | consensus disorder prediction | 177 | 203 | - | - | |
| Apr8g1892 | 230 | SMART | ring_2 | 88 | 129 | IPR001841 | - | |
| Apr8g1892 | 230 | CDD | RING-H2_PA-TM-RING | 87 | 130 | - | - | |
| Apr8g1892 | 230 | SUPERFAMILY | RING/U-box | 82 | 136 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr8g1892 | Apr-Chr8 | 29424548 | 29427774 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr8g1892 | 13 | 137 | C3H Transcription Factor Family | AT4G10150 | 35.156 | 4.12e-20 | 84.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr8g1892 | - | - | aprc:113873018 | 478.018 |