Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1890 ATGGGTGACCCATATGGGTTACAGGAGGATCTCCGGCGACTTATATCAGCGAGAACCCATTTGAGCACCACCAACACACATCTACTTGAACCACTGTGTGTCCACCATGCTCTAAGTGCTGTTGCTGCTTCTACTACTCCGCCCAATACCTATGACCCGATCATGGATGCCAACGCTTTCTACCCTCGCTCCTTCACTCACTTCACACACCATGACTATTCCTCTTCTAATGTAAACGCCACGACTTCTACTACTGCTGTTGCTGCTGCCACTGTCTCCGATCATGCTACTACTACTCCATTCTGCAGCATAGAGAGTGCAGAGAAAGGGTGGCTTGGGTTTGATTCCGGGAACAATAGGTGGCCCAGACAAGAGACCCTTTCACTTCTTGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGCGGAAAGAAATGCAAAGAGAAATTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGAAAAGCTAGTAGACAAGATGGGAAGCACTACAGATTCTTCAGGCAACTTGAAGCAATATGTGGAGAAGCAAATAATAATGATGCCTCGACTCCAGATAAAACTCACCGAGCTGGTGGAAACACTGCTAACATTCAAATACCAAGCTTGACAATTAACCAAGATCACAACGGTGACGTCTCTAATAATAACATAAAGTGCTCAGAGAGCCTCAGCATCTCAAACTCATCCGAATTTGAAACATCCTCATCTGAAAACAATGATGAGGATCTTTCAGCTGTTGCTTACATGATGAAGCAATCAAGGGAGAAGCAGAAAGGGTTAGACTTAGACCAGAAACAAAGTGGTCATAGGAGGGTAAGAAAAAGCTGGAGGGCTAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATCATAAAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGGGTTGTGGAGCAAAGAGAGCAAGAGATGGCATCTAAAGAGGAAGAAAGGAAGAGAAAAGAGTCAATGAGATTTGACCAACAAGTGCATGAACTGTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGGGATGCTGCATTGATTGAGGTTGTGAGGAAACATATTGGGATAGAGCTTGAAACATTGCCATTGTATGAAGCTATGGTTGAAGAAGAACCACCAAATAAGAACAAGAGCCAGGGAACTATTGATGCCAATGAATATCCCAGTGAGGGTGTTGATCATAGAAGTAGTCGATGGACCGAAATGGAGATTTCAAATCTGATACAGCTAAGGACTGGTTTTGAACAACGACTCAGAGAAAATGGGTACTTAGAAAATGGCCTTTGGGAAGAAATAGCAGCAAAACTGGCTTGTTTGGGGTTTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATGTCTCTTAGAAGGACAGTGGAGTATGATAGTGCCAAAACAAGGCCTTGGTGTTTGGGACTTAAGCTGACGGATGATGATGATCTTTGA 1572 0.4358 MGDPYGLQEDLRRLISARTHLSTTNTHLLEPLCVHHALSAVAASTTPPNTYDPIMDANAFYPRSFTHFTHHDYSSSNVNATTSTTAVAAATVSDHATTTPFCSIESAEKGWLGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEANNNDASTPDKTHRAGGNTANIQIPSLTINQDHNGDVSNNNIKCSESLSISNSSEFETSSSENNDEDLSAVAYMMKQSREKQKGLDLDQKQSGHRRVRKSWRAKVEEIVDSHMRKIIKTQDAWMERMLRVVEQREQEMASKEEERKRKESMRFDQQVHELWAKEKAWVEARDAALIEVVRKHIGIELETLPLYEAMVEEEPPNKNKSQGTIDANEYPSEGVDHRSSRWTEMEISNLIQLRTGFEQRLRENGYLENGLWEEIAAKLACLGFDRSASECKQIWDEISMSLRRTVEYDSAKTRPWCLGLKLTDDDDL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1890 523 MobiDBLite consensus disorder prediction 288 307 - -
Apr8g1890 523 MobiDBLite consensus disorder prediction 409 433 - -
Apr8g1890 523 PANTHER - 29 504 - -
Apr8g1890 523 SMART sant 433 496 IPR001005 -
Apr8g1890 523 SMART sant 117 180 IPR001005 -
Apr8g1890 523 Pfam Myb/SANT-like DNA-binding domain 435 511 IPR044822 -
Apr8g1890 523 Pfam Myb/SANT-like DNA-binding domain 119 206 IPR044822 -
Apr8g1890 523 Gene3D - 121 183 - -
Apr8g1890 523 Gene3D - 437 499 - -
Apr8g1890 523 Coils Coil 333 360 - -
Apr8g1890 523 CDD GT1 435 500 - -
Apr8g1890 523 CDD GT1 119 185 - -
Apr8g1890 523 ProSiteProfiles Myb-like domain profile. 119 178 IPR001005 -
Apr8g1890 523 ProSiteProfiles Myb-like domain profile. 429 494 IPR001005 -
Apr8g1890 523 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 29 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1890 Apr-Chr8 29407871 29410377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1890 120 499 Trihelix Transcription Factor Family AT5G03680 44.416 1.90e-90 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr8g1890 Myb_DNA-bind_4 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1890 - - gmx:100787750 757.288