Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1886 ATGGTAAACCAAAGGGTTGAACAACATATTACGGAAGGGCAAAGGAAAAAGAAGAGGAAGAAGGAAGGTTTGATTCCTCGTCCTGCATGCTCATGGGTGTATTTTAGTAAGGAGTTTATCAAAGAGTATATTGCTTCCCATCCTGAGTCATCGGGTCTTAAAGCTGCAACAAAGGCTGCCTCAGATGTGTGGAAGTCGATGAGTCTTGAAGAGAAGGAAAAGTATTCTAAGCATGCACGTGAAGCGTGGGATGGCTACTTGAGTTCAGGTGCTGCCCCTGTCCCCAAACCAAAGAAACAGACTAAACTAGTAACAAGATGCTCTCCCGGTCGCTTATTCAATGTGTTACAGTGCCTCACACCTGAACAGAAGGAGGCAGTTAAGTGTATGGGCTTTGGCAGCCTCCTCGGCCTTAGATGCCAAACGCTTCGGCGCAGTTTGTGTCTTTGGTTATTGGAGAGGTTTGACACTACTAATTGCAGCTTGGAGATCTGTAATGAGCACATGATGTTAACTCCGAAAGATGTAGAGATAGTGATGGGATTATCTGCCAATGGGAAAGAAGTGGTGAACTCTGGTCCAGAAGACTTGATTTTAGATTTACGTAACAGTTATAATGCAACAAATCATGGAATTTCAGTGCGACTTTTAGAGGAGCGGTTGGCAACTGCTGAGGCTGGAGATGATTTTAAGAGGCTGGTTCGAGAGATATCACGCTTCCATCAAGGGAAGCAAAGAGCTGTTGGTGGTTGTCTCTTATTTCTGCAGCTTTTCTACTATGAGAGCATATCTCTTGAAGGGGCTTCTGCTCTAGTTCCATATAGTGTTCCATATCTGTTTTCTTGGGGGGAGGAGGAGATTGCTGAGAGAGAAAAACGAGAAAAGGAACTTGGCGGTTATGGTTTTGGCGAGCCATCAAGCAAGAAGAAATGCCATAGTATGAATTTCCCAGATTATAGAAATCATCCAGCTGGCCCATCAGTTAGCACAGAAAGCACTAGGATTGGGCATGGTTCCCTTCTTGAACCAGAATCAAATGAGGAAGGCATCCTTGGTCTTCCCAGGACCAGAACTGTATTGAGTGGAGATGCGGATTTAGTAGTTGAATCAATCAAATCACCTTGCCAAAACAGAGAATATGGCTGCAATGAAACTCTGGATTACATGACCAGTAATGACCATGAAGTGACATGCATCTATTCTCCATGTACTTGCCCACTTCAAGGCTGCAACTATGTTGGGTCGTTTGAACAGTTGGCATTGCATTTCAGCAGTAAACACTGGGATTCTGGGAGACGATTCAAATATAATTATCCATTATCTATCTATTTACAAATGAACGAACAATTCCTTGTTCTCCAGGCAGAAGAAGATGGGGTTCTCTTTCTCCTCAACAAGGGCACAGAGATTAATGGGAATATAGTGATGATAACCTGTATTGGTCCAAGCTCATTAAAAGAGAGGTTTACTTATGAGATTGTTTCATGTAGGGGAAGAAGTTCTCTTAGATTAAAGTCTGTAGCTGAGAGTTTTCCTGCTCGAATGGAGGATTTTCCCCCAGTAGATTTTCTTTTAATTCCTTTCCATTTTCTTGCTTCTTCAGGGAAGCTCAATATCGATATTTGTATATGGAATTCTACTGATCATGATGTAGATTGCTCTTGA 1665 0.4258 MVNQRVEQHITEGQRKKKRKKEGLIPRPACSWVYFSKEFIKEYIASHPESSGLKAATKAASDVWKSMSLEEKEKYSKHAREAWDGYLSSGAAPVPKPKKQTKLVTRCSPGRLFNVLQCLTPEQKEAVKCMGFGSLLGLRCQTLRRSLCLWLLERFDTTNCSLEICNEHMMLTPKDVEIVMGLSANGKEVVNSGPEDLILDLRNSYNATNHGISVRLLEERLATAEAGDDFKRLVREISRFHQGKQRAVGGCLLFLQLFYYESISLEGASALVPYSVPYLFSWGEEEIAEREKREKELGGYGFGEPSSKKKCHSMNFPDYRNHPAGPSVSTESTRIGHGSLLEPESNEEGILGLPRTRTVLSGDADLVVESIKSPCQNREYGCNETLDYMTSNDHEVTCIYSPCTCPLQGCNYVGSFEQLALHFSSKHWDSGRRFKYNYPLSIYLQMNEQFLVLQAEEDGVLFLLNKGTEINGNIVMITCIGPSSLKERFTYEIVSCRGRSSLRLKSVAESFPARMEDFPPVDFLLIPFHFLASSGKLNIDICIWNSTDHDVDCS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1886 554 Pfam HMG (high mobility group) box 25 87 IPR009071 -
Apr8g1886 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 240 553 - -
Apr8g1886 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 6 230 - -
Apr8g1886 554 ProSiteProfiles Zinc finger SIAH-type profile. 370 428 IPR013010 GO:0008270
Apr8g1886 554 SUPERFAMILY TRAF domain-like 370 543 - -
Apr8g1886 554 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 25 86 IPR009071 -
Apr8g1886 554 SMART hmgende2 24 95 IPR009071 -
Apr8g1886 554 Gene3D High mobility group box domain 10 88 IPR036910 -
Apr8g1886 554 SUPERFAMILY HMG-box 11 87 IPR036910 -
Apr8g1886 554 CDD HMGB-UBF_HMG-box 27 86 - -
Apr8g1886 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 240 553 IPR044286 -
Apr8g1886 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 230 IPR044286 -
Apr8g1886 554 Pfam Seven in absentia protein family 367 517 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr8g1886 554 MobiDBLite consensus disorder prediction 1 22 - -
Apr8g1886 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 423 IPR013083 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Apr8g1886 Sina 1.1e-15 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1886 - - gmx:100782920 909.827