Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1881 ATGGACGTGCCCAAACACCGCGCCACTCGAACGACGTCGTTGAGGGACGCTTCCGAGTCCTCCAAGATGGAGGGGACTGGTAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCAATTTCGCGTTTCGTCTCGCATGCGAATCTTGATTTCTTGCTCGAGGCGGAGCAAGTTGTAGCCGAAGGACATGGTGTTGTTCTTGTTAATACTGATGATGCAGGCATGCTGATGGTAACAAATTTTCGTCTTCTTTTTCTGAGCGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCATTAGCAACCATTGAGAAGTTTAACAAGACAGTTGTAAAGGTTCAGTCAAACACTCGTCATCTAGACAAGACACCAACGCAAAGACTGCTCCAGGTGATTGGAAAGGATATGAGAATTATAGTCTTTGGTTTTAGACCACGTACAAAACAGAGACGTGTGGTATTTGATGCACTACAGAGGTGTACAAAGCCAGTGAGATTATGGGATCTTTATGCTTTTGGGTCAGGACCTTCTAGGTTTAAGAACACTACTCCACTGGTGCGCTTATTGGATGAGTATTTTCGACTGCTTTGCATAGGTTCTTATCGTGCATCAATCAATATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGACCTATGGAGAATAAGTAGCGTAAATTCCAATTATACAATGTGCCAGACGTATCCATTTGCTTTGGTTGTTCCAAAGGTCATTAGCAGTGATGATGAAGTGCTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTACCTGTAGTTTCGTGGTGTCATCCTGTTAATGGAGCTGTTGTTGCTCGATCTTCCCAACCCTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGATGAAAAACTTGTTGCTGCACTTTGCAGCAAACTAGATGATGGCTCAAGGAGAAAGCTATATATTGCTGATGCGCGGCCAAGGAAAAATGCATTAGCTAATGGAGCCATGGGAGGTGGTTCTGAATCGTCATCAAACTATTTTCAATCTGAGATAGTTTTTTTGGGGATAGACAACATCCATGCAATGAGAGAGAGCTTTGCTCGGCTCCGAGAATACATGGACACTCATGGAAAAGCGTCATCAGATGGAATGTCATCTTTTTTGAGACATGGTGGGTCAACATGGGGTGGTGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACTCTTGGGGACAGTGGATGGTTACTGCATGTTCAAAGTGTGTTGGCTGGTGCAGCCTGGATTGCTGCTCGTGTTGCTATGGAAAAGGCTTCTGTGCTTGTACACTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTACCGGACATTCACGGGGTTTCAGGCACTCATCGAAAAAGATTGGCTTGCATTTGGTCATCCATTTTCTGATCGTGTGGGAATGCCATCTGTCTCTGGAACTACCAACATGCCTTTTGAGTTATCTAGGCAGTCTTCAACTGGCAGTTTCCCACCATCACCTCTGCGGCAGTCATCAGGAGCATTCTCATCTCAACCTCCAGCTACATCTCACACTCATAACTCAAACAATTGCTCTCCCATTTTTTTGCAGTGGGTAGACTGTGTTTCACAATTGTTGCGGATGTATCCTTTTGCTTTCGAGTTTTCTGGGGCTTTCCTTGTGGACGTCCTAGATTGCATGCTTTCTTGTCGTTTTGGAAACTTCCTATGTAACAGTGAGAAGGAGAGGCAGCAATGCAATGTTTTCGAAGCTTGTGGGTGTCTGTGGGTATACTTGGCTGATTTGAGGACATCAGAAGGAGGTTCCCATGTTCATTACAATCCCTTTTATGATCCACTGAAGCACAATAGTGCGCTTCTACCCCCAGCAGCAGCATTAGCCCCAACTTTATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAAACTGGGGAGATTGAAGCACAATGCAGGAAGATAGTTATGAAATACTCTGAGATGCAGAAGGCTAAAGAAATGGCTGAAAGGAAAGCTAAGGAAATGACAAATGCCATGGAATCGCTAGGTGCTGAATTACGACGTGAGAAGCAACTAAACAGCTCAGCTACGAACATGGCCAAGAATATAAGCAAAGAAAATACGGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCACTTCTCTGGTAGTGGTGAATGTACTGTTGACATTGAAAGCAACCCAGACTTACTGTATTGTTGCTATAAGAATGAATCAAATAGTACTGTACGCGATGACAAAAAGGCTATGTATGTTTCGGTTCCGGTTACAGTAGATGATGATGGTGGAAACAATGCCATTGGCCGAGTATGTGAAACACTCTGCCCATTTCGCTCTGCCGATGGAGGCTGCAGGTGGCCAAATGGTGGCTGTGCTCAACTAGGTAGCCAGTATGTTGGTTTGAAGGCAAATTTTGATGCATTCGACCAACTGTCAATTGATGACAGTTATTTCAAGTCTGACTGA 2547 0.4484 MDVPKHRATRTTSLRDASESSKMEGTGSWDALEWTKIEPISRFVSHANLDFLLEAEQVVAEGHGVVLVNTDDAGMLMVTNFRLLFLSEGTRKVIALGTIPLATIEKFNKTVVKVQSNTRHLDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRVVFDALQRCTKPVRLWDLYAFGSGPSRFKNTTPLVRLLDEYFRLLCIGSYRASINMIESGSFTLSNDLWRISSVNSNYTMCQTYPFALVVPKVISSDDEVLQACSFRARCRLPVVSWCHPVNGAVVARSSQPLVGLMMNMRSNMDEKLVAALCSKLDDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFLGIDNIHAMRESFARLREYMDTHGKASSDGMSSFLRHGGSTWGGGNLSSMSASVSTLGDSGWLLHVQSVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALIEKDWLAFGHPFSDRVGMPSVSGTTNMPFELSRQSSTGSFPPSPLRQSSGAFSSQPPATSHTHNSNNCSPIFLQWVDCVSQLLRMYPFAFEFSGAFLVDVLDCMLSCRFGNFLCNSEKERQQCNVFEACGCLWVYLADLRTSEGGSHVHYNPFYDPLKHNSALLPPAAALAPTLWPQFHLRWACPEEAQTGEIEAQCRKIVMKYSEMQKAKEMAERKAKEMTNAMESLGAELRREKQLNSSATNMAKNISKENTAIKRAIQSMGCKVHFSGSGECTVDIESNPDLLYCCYKNESNSTVRDDKKAMYVSVPVTVDDDGGNNAIGRVCETLCPFRSADGGCRWPNGGCAQLGSQYVGLKANFDAFDQLSIDDSYFKSD* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1881 848 ProSiteProfiles Myotubularin phosphatase domain. 201 651 IPR010569 -
Apr8g1881 848 MobiDBLite consensus disorder prediction 1 25 - -
Apr8g1881 848 MobiDBLite consensus disorder prediction 504 536 - -
Apr8g1881 848 PANTHER MYOTUBULARIN-RELATED 19 847 IPR030564 -
Apr8g1881 848 ProSitePatterns Tyrosine specific protein phosphatases active site. 439 449 IPR016130 GO:0016311|GO:0016791
Apr8g1881 848 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 212 655 IPR029021 -
Apr8g1881 848 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 847 - -
Apr8g1881 848 SUPERFAMILY PH domain-like 52 173 - -
Apr8g1881 848 Pfam Myotubularin-like phosphatase domain 182 593 IPR010569 -
Apr8g1881 848 Gene3D - 63 162 IPR011993 -
Apr8g1881 848 Coils Coil 676 710 - -
Apr8g1881 848 SMART gram2001c 41 111 IPR004182 -
Apr8g1881 848 CDD PTP-MTM-like 262 553 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1881 1 846 Protein tyrosine phosphatase (PTP) family AT3G10550 68.588 0.0 1161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1881 K18081 - gmx:100781842 1520.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1881 8 29305021 29318867 Apr8g1881 8 29305021 29318867 ECH