Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1865 ATGAATTGTCTTCACAATCTTCCTCGATTCTCTGTTTCGCCCTTTCAAACAGTTGCTACGCGCTACCACAAGAACCTTCCTCTTTCTCTGAGGATCGTTAATAGTTCTTTTCAAGATCGAAATATGGCACTTAAGTCTGTTTCAGGTTCTACACCGAGTGCAGAGACAAGTAGTGCAGATATGGAGGAAGAAAAGTCAGAGATATATAGTCACAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAACTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGTCTACAGACTCCTGAAGATGTTGACAAGCTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTGCAACAAGATCCAGACCTTGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAACAAATGCAATGACATGCAACACTTGCGTGCTGAGATAAGGGACTTTGATCCATTTGATTTACGGATGCGGCTTCCTGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTGACATATATTCATTGCACTGCTGGACTTGGAAGAGCTCCTGCTGTTGCTTTGGCATATATGTTTTGGGTACTGGGTTACAAATTTAATGAGGCTAATACACTACTTCAGAGCAAAAGGACATGCTGTCCAAAACTGGATGCCATTAAAAGTGCAACGGCTGATATCCTTACAGGCCTCAGTAAGAAGCCCATCACTTTGTCATGGGAAGACAGCAATTGCGCTTCAGTGGAAATTTCAGGACTCGATATTGGATGGGGGCAGGAAGGACTCTACGAGTACAAGTACATCGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACCTCTCCCAACAAAGACGGCCATGTTAACAATTTTATTCAAGTCCTTGATAGCAGCAGCGTTCGGGCCTCTCTTTGGGAGAGATTGACTGGTGACGATCCTGATCTGACAAAGGATGAACGACTGAGAATAAAAGAGTTTTTTGAAGCTTGTCCTGATGAGGATTTGTGA 1056 0.4223 MNCLHNLPRFSVSPFQTVATRYHKNLPLSLRIVNSSFQDRNMALKSVSGSTPSAETSSADMEEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYANKCNDMQHLRAEIRDFDPFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKFNEANTLLQSKRTCCPKLDAIKSATADILTGLSKKPITLSWEDSNCASVEISGLDIGWGQEGLYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFIQVLDSSSVRASLWERLTGDDPDLTKDERLRIKEFFEACPDEDL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1865 351 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 349 IPR030079 GO:0005982|GO:0007623|GO:0019203
Apr8g1865 351 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 167 225 IPR000387 GO:0016311|GO:0016791
Apr8g1865 351 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 349 - -
Apr8g1865 351 CDD DSP_laforin-like 89 236 IPR045204 GO:0019203|GO:0046838
Apr8g1865 351 Gene3D Protein tyrosine phosphatase superfamily 79 264 IPR029021 -
Apr8g1865 351 Gene3D Immunoglobulins 271 314 IPR013783 -
Apr8g1865 351 Pfam Dual specificity phosphatase, catalytic domain 133 227 IPR000340 GO:0008138|GO:0016311
Apr8g1865 351 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 232 IPR029021 -
Apr8g1865 351 CDD E_set_AMPKbeta_like_N 249 310 - -
Apr8g1865 351 SMART dsp_5 90 240 IPR020422 GO:0006470|GO:0008138
Apr8g1865 351 ProSiteProfiles Dual specificity protein phosphatase domain profile. 90 247 IPR020422 GO:0006470|GO:0008138
Apr8g1865 351 Pfam Glycogen recognition site of AMP-activated protein kinase 274 313 IPR032640 -
Apr8g1865 351 SUPERFAMILY E set domains 248 311 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1865 Apr-Chr8 29120252 29128439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1865 89 351 Protein tyrosine phosphatase (PTP) family AT3G52180 63.028 1.44e-131 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1865 - - gmx:100804010 604.749