Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1855 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAACCTGCTGATGCCCACGCCGAGTTTGAGCGTGGACTGGAGGAGTTTATGCGCGGGCACTTGGATGATTGTATGTCGTTTGCTTCGTGTAGCTCCTCCCGTGCACCAGATGATGAGGACGATGAGGGTGATCAGCTAGTTCGGAGGAGGCGGAGGTCTGATCTTGAAGGGGATGATTTAGCTGAGTCTTCGGCTGCACGCAGGCGTCATTCGCGGATTTTGAGCAGATGGGCTGCACGGCAGGCACAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTCGCAGGATTGCATACCGTCTCAATGCTGGACTCTTCTTTCCTGAGGGGGTCACAGTCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCCAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAAGATGAACATTTATTGAACCGGGCACGTGAAAGGATGAGGGAAAGGTTGCGCCGTCAAAGGAATTCTGACTCTAATACCAATGTGTCCAGTACCATGTCTGATAGTCGAGGCAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCACATTGGATCAAGGAATGCACATGTGGATCATAATGGGTCTAGCAGGGAACAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGGCAGATTGTTAGGGGATGGATGGAAAGTGGTATTAGTGATCATTCGTCTAATGTGAGTCAGAGAAACAATAACCGTAGGGCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTAAGAATTGTCAGGGAATGGGTACAAATGACTAGCCAGCAGAGAGGATCTCGTGGGAGCCGGAGGGATACTCAAGTAAGTGAAGGTGCTCAAGTTGATCGAGTCCGTGATGTGGTGACTGATAATGATGAGGGTCAGCCTGAGCATGTTCGGCGGGACATGTTGAGGTTGCGGGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGAGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCACTGCTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAAATGAGAGGCCTCCGTCTATGGCTGCAAGTGAATTAGTTCAGTTAAGACAACGACACACAGTCTCTGGTTTAAGGGAGGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCTCCAATCCTGATACCACATCAAATAGTAATGTTAGTGAAACAAGAAGTGATGAAAACCAAGCAAACAGTTTGGCAGATGCCCAACAAGAAAATTATGAACAAGAGCAGAGAAGGGGTGTGGAAACTGATGTGCGACAGTTGCCTAATCAAACAGGAACTCTGGAGAGTAGCACAAGTGAGAGTATTAGTTGGCAAGAAGCTAGTAATCAAGGAGTGAATTGGCAGGAACAAATTGCTGAAGAAGGGGGAGGAAACTGGCAACAGAGTCCGTTCAACCAGATTAGAGATGGGAGGGCAGTCAATGATTGGCCACAGGAACCTCCCAGAAATTTAGCTGGGGAAGATCATCCGCGGGAAACTCAAAGAGCTTGGCACGATGATAACACGAGGGAAGCTGTTAGTAATTGGTCCGAAGGACCTTCTGGAGCTTCAAGGAATCGCCGTGGTGTTCCCTTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGCGAAGTGTTTCTAACCTTCTTCGTAGTGGTTTCCGAGAGAGTCTGGACCAACTAATACAATCATATGTGGAAAGGCAAGGTCGTGCACCCATTGACTGGGATTTGCATCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGGGACCCTGACCAGCAGGGTGATGAACGTGGTGAGGGTCAACATGAAGCCATTAACAGACCTTCAATGGTATTGCCTTCTCCACCAGTACCTCCACCACAACCGTTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGCTGGAGGCTTGCATGGATATGCAACTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCTCTGAACCGCTCAGCCGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCCAAATGGGGGCACGTGAAAAAAGGAACTTGCTGTGTATGTTGTGATAACCATATCGATTCTCTTTTGTACAGATGCGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGAGGTGGAGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2547 0.4814 MTDFQPLQQKPEPADAHAEFERGLEEFMRGHLDDCMSFASCSSSRAPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRRQRNSDSNTNVSSTMSDSRGSENQGSLGDASESENDYGTWSHDHIGSRNAHVDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDTQVSEGAQVDRVRDVVTDNDEGQPEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVENERPPSMAASELVQLRQRHTVSGLREGFRSRLENIVRGQAGSNPDTTSNSNVSETRSDENQANSLADAQQENYEQEQRRGVETDVRQLPNQTGTLESSTSESISWQEASNQGVNWQEQIAEEGGGNWQQSPFNQIRDGRAVNDWPQEPPRNLAGEDHPRETQRAWHDDNTREAVSNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDPDQQGDERGEGQHEAINRPSMVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1855 848 MobiDBLite consensus disorder prediction 482 510 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 52 78 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 40 78 - -
Apr8g1855 848 Coils Coil 725 745 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 537 587 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 297 318 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 173 244 - -
Apr8g1855 848 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 848 - -
Apr8g1855 848 CDD mRING-HC-C3HC5_NEU1 795 835 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 649 678 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 548 571 - -
Apr8g1855 848 Coils Coil 457 477 - -
Apr8g1855 848 SUPERFAMILY RING/U-box 795 841 - -
Apr8g1855 848 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 848 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 297 312 - -
Apr8g1855 848 ProSiteProfiles Zinc finger RING-type profile. 796 835 IPR001841 -
Apr8g1855 848 MobiDBLite consensus disorder prediction 211 244 - -
Apr8g1855 848 Pfam Zinc finger, C3HC4 type (RING finger) 793 840 - -
Apr8g1855 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 780 846 IPR013083 -
Apr8g1855 848 MobiDBLite consensus disorder prediction 180 210 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 1 22 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 432 510 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 434 469 - -
Apr8g1855 848 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1855 Apr-Chr8 29015284 29022124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1855 778 842 C3H Transcription Factor Family AT3G06140 37.879 1.26e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1855 - - gmx:100805607 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1855 8 29015284 29022124 Apr8g1855 8 29015284 29022124 ECH