Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1847 ATGTCCCGCGATTCCCCAACCAAACTTGGTCCTGGTTTCCGATTCCACCCCACCGACGAAGAGCTCGTTCGGTTCTACCTCAAGCGCAAGGTCACCGGAAAACTACGCCGTTTCGACTACATCGCCGTCGTCGACGTCTACAAGTTCGAGCCGTGGGACCTTCCCTGTAAGTCGAAGCTGAACACGAGGGACTTGGAATGGTACTTCTTCAGCGTGCTGGACAGGAAGTACGGAAATGGTTTCAGAACCAACCGCGCCACCGAGAAGGGTTACTGGAAGACCACCGGAAAAGATCGCCCCGTCATGAATGGCCACCGCACTGTCGGAATGAAGAAAACCCTCGTTTACCATCTGGGTCGGGCCCCACATGGTGCTCGCACCAACTGGGTCATGCACGAGTACAAGCTTGTTGATGATGAGCTGGCTCAGGCTGGAGTTGTTCAGGATGCTTTTGTGCTGTGTAGGATTTTCGAGAAGAGTGGTGCTGGTCCCCAGAACGGGGCCAAATATGGCGCTCCCTTGTTAGAGGAGGAGTGGAGTGATGAGGATGAGGAGGTGGAGGTGGCTCCCTTTCTGGCTGATGAGGTTTTGAATGCGGTGTCTGATGGTGCATATGTTGAAACGGATGACCTTGAACAGAAGCTTGATTTGAGTGATGCAATTGGAGGTGCTGGTTTTCCATCATCAAACTTCTATCATGGGGAGTGTAGTAGCCATCCTGATCATTCCCAAGTATTTATTACAGAACCGAAGCCATTGGATATGGCTGAGCAACATGGTATGAACACCAATTCTGTGATAGATGGAGACAATGGTGAACTGAATCCTCTGAATTTCAATGGCACGTTTGATGATCTAGATCTATACTTGGATGCTGCTGATTATCTTCCGATTGTTGATGATGGATCATTCTTGGAAACCAATGATCTTGTGTTTCCGACAGAGGGTAATCCCACCCAGGTTGATATTTCTGGGACTGATATGATGGAAGAGTATCTTGCATACCCTGATGATGATATTTCCAAGTATATATCTTTTGATCTTCCTCAGAATACTGAGTGTGAAAACTCTGTTCCCAACCAAGGATCACCTTTCATCCAGCAGAATGTGGAAGGAGAAACCACTGATATGTCCGGGGCAGTCAAACATGAATTTGAAGCGGAATCTAGCAATGAAGCTTCTTCAAGCAAGAATGCACAAGAGTCCAAATTTCTTTCAGGAAATACAAATCAATTTGTAAAGCAGGCCAATAAATGGTTGGCCAGCATACCTGCTGCTCCCGCATTTGCTTCGGAGTTTCCTTCTAAGGAGATTGCTCTTGCTCAGTCTTCCAACTCAGCTCATATAACTGCAGGTATGATCAGCATAACAGACATTACATTAAGAGGCAATGGGATGGATTGGACGATGGGCAAGAATGGAGGGTTTAACGCTATAATATCTGCTGGGTTTTCTGAACCCAATGTTAATTCTGCTTCTTTGATGCCAATTTCTGGCTTGGTCTCTAGCAAGACCGCATTTGTCTTGTCACATGGCTGGATTTTTGTGATGGGTTTCTCGGTTCTTGTTCTTTCACTGAGTTTCAAGATTGGAAGCATCATGTATACTGGTAAATGA 1617 0.4657 MSRDSPTKLGPGFRFHPTDEELVRFYLKRKVTGKLRRFDYIAVVDVYKFEPWDLPCKSKLNTRDLEWYFFSVLDRKYGNGFRTNRATEKGYWKTTGKDRPVMNGHRTVGMKKTLVYHLGRAPHGARTNWVMHEYKLVDDELAQAGVVQDAFVLCRIFEKSGAGPQNGAKYGAPLLEEEWSDEDEEVEVAPFLADEVLNAVSDGAYVETDDLEQKLDLSDAIGGAGFPSSNFYHGECSSHPDHSQVFITEPKPLDMAEQHGMNTNSVIDGDNGELNPLNFNGTFDDLDLYLDAADYLPIVDDGSFLETNDLVFPTEGNPTQVDISGTDMMEEYLAYPDDDISKYISFDLPQNTECENSVPNQGSPFIQQNVEGETTDMSGAVKHEFEAESSNEASSSKNAQESKFLSGNTNQFVKQANKWLASIPAAPAFASEFPSKEIALAQSSNSAHITAGMISITDITLRGNGMDWTMGKNGGFNAIISAGFSEPNVNSASLMPISGLVSSKTAFVLSHGWIFVMGFSVLVLSLSFKIGSIMYTGK* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1847 538 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Apr8g1847 538 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 6 533 - -
Apr8g1847 538 Pfam No apical meristem (NAM) protein 11 136 IPR003441 GO:0003677|GO:0006355
Apr8g1847 538 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Apr8g1847 538 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 533 - -
Apr8g1847 538 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1847 Apr-Chr8 28934683 28938072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1847 1 534 NAC Transcription Factor Family AT5G04410 40.778 2.99e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr8g1847 NAM 4.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1847 - - aprc:113871167 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1847 8 28934683 28938072 Apr8g1847 8 28934683 28938072 ECH